Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30177
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    26   6.5  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   8.6  

>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +1

Query: 457 ALNSLPL-IFLLDSLITQRVVYYQRWQSV 540
           ++++LPL I L+DS +++RVVY +  Q V
Sbjct: 146 SIDTLPLSISLMDSYVSRRVVYCKHIQLV 174


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 260 KKCC*TSASASV*VLGYYC 204
           +KCC     +S+ VLG+YC
Sbjct: 14  RKCCNFILGSSIPVLGFYC 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,481
Number of Sequences: 5004
Number of extensions: 48774
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)