Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30177
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    29   2.9  
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923...    29   5.2  

>02_02_0654 -
           12662931-12663200,12663296-12663550,12664097-12664268,
           12664354-12664581,12664727-12664860,12665018-12665101,
           12665332-12665538,12665641-12665973,12666175-12666281,
           12666439-12666593,12666778-12666810,12666924-12666972,
           12667152-12667312,12667413-12668313,12668391-12668481,
           12668558-12668749
          Length = 1123

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 573 IQIDLNIIVSFKEYGSKPALNKG*YLTSYLSKMSFRRVLW 692
           IQ   N+   +K Y   P+ N   YLT++L  + F  V W
Sbjct: 847 IQCVANLWKQYKSYWKNPSYNSLRYLTTFLYGLFFGTVFW 886


>03_02_1025 +
           13289146-13289586,13291882-13292087,13292174-13292323,
           13292412-13292545,13292843-13292949,13293031-13293137,
           13293581-13293686,13294098-13294217,13294318-13294474,
           13295163-13295254,13295338-13295582,13295668-13296268,
           13296362-13296457,13296541-13296794,13297622-13297715,
           13299138-13299188
          Length = 986

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 98  SCSYQLLYTCQCYFMSYCKPCR 33
           +C Y  LY C+C+F  Y  P R
Sbjct: 833 NCGYSQLYFCRCFFGHYTVPGR 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,861
Number of Sequences: 37544
Number of extensions: 270128
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)