Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30175
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   3.6  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   4.7  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.2  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   8.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   8.2  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 357 VMESEMMPSG-DGQTMVKDWWCKSRNGFPQRLMLPLGTI 470
           ++  E + SG D +T+  ++WCK R+ F +     LGT+
Sbjct: 283 IIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTL 321


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 457 PSVRLEVWRCRCTSSCRRPHRYALAHIGHDHDE 555
           P   L VW    T SCR   +  L HI   HDE
Sbjct: 679 PDTSLRVWDLN-TGSCRDILKCPLGHIFFQHDE 710


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 210 GQAHERQRQTPRHVRLDSFMYKLVNGKNTIVRSSMDMQGFIPEYLS 347
           G+AH R R+ PR + +DS   K    KNT    + D +  +   +S
Sbjct: 85  GRAHPRSRRPPRQISIDS--AKKEETKNTGSTKAADTKSSVEATIS 128


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 109 RLNHHPFQVS-IDVMSDKTVDAVVRIFL--GPKYDCMGRLMSVNDKRLDMFDWTALC 270
           RL  HP  +  IDV+S +    VV  ++  G  +DCM R  S  ++    F W  LC
Sbjct: 63  RLIEHPNVLQLIDVISAQEQLFVVVEYMPGGELFDCMLRKGSFTEQDTAKFLWQILC 119


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 593  WRYMSSSDKHNGPSSWSCPMWARAYRCGRRHDDVHLHLQTSNRTEGQHKSLRE 435
            + Y+  SD H     W  P+          H+D+   L   N TEG   ++RE
Sbjct: 1103 YEYIQLSDDHTLDDFWKTPVPIFYGEPDCIHNDMKGELNYENETEGFSINIRE 1155


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +3

Query: 228  QRQTPRHVRLDSFMYKLVNGKNTIVRSSMDMQG-----FIPEYL---STRRVMESEMMPS 383
            Q    RH R +  M +L+   NT++RS +++Q       IP  +   S  R++  +  PS
Sbjct: 3316 QYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNFSFQIPSSIPLSSHMRIIADK--PS 3373

Query: 384  GDGQTMVKDWWCKSRNGFP 440
                  + D +CK+R G P
Sbjct: 3374 YVTMQTISDEYCKNR-GMP 3391


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 10  VDEYDMDISNAMYLDATEMQNKTSDMTFMARMRRLNHHP 126
           +  YD + S A  L+A +M N T+D      ++R  + P
Sbjct: 184 IQSYDDEQSFAFLLEAVKMDNSTADEAVRELVQRAVNSP 222


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 228 QRQTPRHVRLDSFMYKLVNGKN 293
           ++QTP    + S +YKLV GKN
Sbjct: 506 EKQTPFAKAVGSSIYKLVTGKN 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,604
Number of Sequences: 5004
Number of extensions: 66832
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)