Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30175
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0164 - 6066744-6067637 29 3.7
10_01_0105 + 1287423-1289924 29 4.9
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 29 4.9
04_04_0583 - 26375850-26375971,26376070-26376139,26376227-263763... 29 4.9
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 4.9
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 6.5
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 28 6.5
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 28 6.5
08_01_0366 + 3236615-3236917 28 6.5
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 28 6.5
08_02_1602 - 28148255-28149413,28151927-28152087 28 8.6
>03_02_0164 - 6066744-6067637
Length = 297
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 162 CXCCGPHLPGSQ-VRLHGQAHERQRQTPRHVRLDSFM 269
C C H P SQ + H AH+R+RQ + V++ + M
Sbjct: 103 CHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQTAM 139
>10_01_0105 + 1287423-1289924
Length = 833
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +1
Query: 28 DISNAMYLDATEMQN--KTSDMTFMARMRRLNH 120
++SN YLD +EMQN ++D+++++R+ L +
Sbjct: 179 NLSNLRYLDVSEMQNVVYSTDLSWLSRLHLLEY 211
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 159 NCXCCGPHLPGSQVRLHGQAHERQRQTPRH 248
+C G HL G+QV Q H R P H
Sbjct: 113 DCIVAGDHLRGAQVAASYQRHVRDNPNPSH 142
>04_04_0583 -
26375850-26375971,26376070-26376139,26376227-26376309,
26376452-26376629,26377390-26377851
Length = 304
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 506 RHDDVHLHLQTSNRTEG-QHKSLRESVARLAPPVLDHCLAISGRHHFA 366
++ D+HLH+ TS T G + + LR R PV D L+ S R + A
Sbjct: 185 QYGDLHLHVATSLVTVGSEFRKLRILGVRATAPVGDQNLSASTRTNMA 232
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 433 PLRDLHHQSLTIVWPSPEGIISLSITRRVERYSGIN 326
P R LHH L ++ PE +++ ++VE G N
Sbjct: 61 PPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFN 96
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 183 LPG-SQVRLHGQAHERQRQTPRHVRLDSFMYKLVNGKNTIVRSS 311
LPG +VRLHG+ + R Q+ ++ D N K I+++S
Sbjct: 742 LPGIKEVRLHGEFYARNEQSAPRLKEDLLAQLSENPKKPILKTS 785
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 569 KHNGPSSWSCPMWARAYRCGRRHDDVHLHLQT 474
KH+G W+C ++AY H D HL+T
Sbjct: 137 KHSGHRQWACARCSKAYAV---HSDYKAHLKT 165
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 569 KHNGPSSWSCPMWARAYRCGRRHDDVHLHLQT 474
KH+G W+C ++AY H D HL+T
Sbjct: 136 KHSGHRQWACSRCSKAYAV---HSDYKAHLKT 164
>08_01_0366 + 3236615-3236917
Length = 100
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 542 CPMWARAYRCGRRHDD 495
CPM R RC RRHDD
Sbjct: 31 CPMRRRHRRCRRRHDD 46
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 446 SLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKS 324
S + + + VLD + HH A YT S + LW S
Sbjct: 693 SAGDGASLIIKSVLDRATELLTDHHAAASYTVSNRTLWQAS 733
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 542 CPMWARAYRCGRRHDDVHLHLQTSNRTEGQHKSL 441
CP RCGR+H V L+T + G H+ L
Sbjct: 346 CPKMYVCNRCGRKHFSVLSDLRTHEKHCGDHRWL 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,197,838
Number of Sequences: 37544
Number of extensions: 527472
Number of successful extensions: 1699
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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