Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30175
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           31   0.94 
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   3.8  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            29   5.0  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07)                 28   8.8  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.8  

>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = +2

Query: 284 RKEHHRP*LHGYARIYPRVPFDS-SCNGKRNDAFRRWPDNGQGLVVQVSQRIPSETYAAP 460
           R  HHR   H +   +        S   +R ++  +  D+  G  V ++  +  E+    
Sbjct: 351 RNHHHRHHHHHHKHHHKAANHHKLSTQKQRKNSDLKMEDDVMGNDVGLAAALAMESMKEN 410

Query: 461 RYDWRFGDADVRHRVAVRTGMLLPTLDMTMMKDRCA 568
             D   GDAD +  VA   G+ LPT   T ++DR A
Sbjct: 411 ENDDSSGDADSQSNVANNDGLALPT--NTSLEDRIA 444


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 445  DLCCPSVRLEVWRCRCTSSCRRPHRYALAHIGHDHD 552
            +L C + R  +W+C+   S R PHR   +   +D D
Sbjct: 1138 ELTCYNRRRHIWKCKLDLSSRSPHRSNNSTSANDDD 1173


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 455  QHKSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 312
            ++  LR++  ++   + +H L     HH   +Y  S K+L  ++ H+H
Sbjct: 1563 RYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 447 VSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKG 340
           VSE   C +      PLSGH R  S   PL D S G
Sbjct: 501 VSETTSCPSIDDPDGPLSGHTRPFSSMEPLSDPSAG 536


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 488 DVRHRVAVRTGMLLPTLDMTMMKDRCACRWSSCISTMPLGY--PFDRPIDMAS 640
           + +H+ A +    L  LD ++ K++    W++ +S   LGY  PF   I +A+
Sbjct: 214 ETKHQEANKKKGCLKFLDFSLFKNKAYLLWAASLSLWMLGYFVPFVHLISLAT 266


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/58 (37%), Positives = 26/58 (44%)
 Frame = -1

Query: 449 KSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQ 276
           KSL+ES A       DHCLA  G +H A   T  R       LH    T +G L  D+
Sbjct: 51  KSLQESNAEYC----DHCLACGGDNHKARFCTLRRSF---TKLHTQNITRNGKLRWDK 101


>SB_38598| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-07)
          Length = 336

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 414 WCKSRNGFPQRLMLPLGTIGGLEMQMYVIVSPSAP 518
           WC  R  +P R +L   T   L +Q  VI + +AP
Sbjct: 10  WCLFREQYPWRQLLGATTTHALSLQTLVINAATAP 44


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 318  YPWSYGRWCSFR*PVCT*SCPVEHVEAFVVDAHEPAHAVVLGTQEDADH 172
            YPW++ +  S R      +  +  V   + D   P  A+   ++ D DH
Sbjct: 3392 YPWTWHKHISLRAEFFAVNAAITKVPMGIEDGRIPNRAITASSESDRDH 3440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,023,982
Number of Sequences: 59808
Number of extensions: 583197
Number of successful extensions: 1629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)