BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30175 (719 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical ... 31 0.83 U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical pr... 30 1.9 Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical pr... 28 5.8 Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical pr... 28 5.8 U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. 28 5.8 U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g ... 28 5.8 U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g ... 28 5.8 U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g ... 28 5.8 U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinas... 28 5.8 >AC006733-8|AAF60490.1| 600|Caenorhabditis elegans Hypothetical protein Y32H12A.7 protein. Length = 600 Score = 31.1 bits (67), Expect = 0.83 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 596 WWRYMSSSDKHNGPSSWSCPMWARAYR--CGRRHDD--VHLHLQTSNR 465 WWRY+ S +H+GP+ WA R ++ D LH+QT N+ Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRRDIFTKKFCDRLSVLHIQTKNK 167 >U58762-6|AAG01563.2| 208|Caenorhabditis elegans Hypothetical protein T27F7.1 protein. Length = 208 Score = 29.9 bits (64), Expect = 1.9 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 288 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMPSGDGQTMVKD 410 K+T V SM +PE + T R M +EMM G + M+++ Sbjct: 104 KSTEVMKSMQQLVKVPEIMKTMREMSAEMMKLGIIEEMIEE 144 >Z46937-5|CAA87057.1| 376|Caenorhabditis elegans Hypothetical protein F43C1.2a protein. Length = 376 Score = 28.3 bits (60), Expect = 5.8 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Frame = +3 Query: 315 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW---CKSRNGFPQRLMLP-LGTIGGLE 482 D GF+ EY++TR E+M + G T D W C R + P + L Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVWSVGCILAEMLSNRPLFPGKHYLDQLN 241 Query: 483 MQMYVIVSPSAPVCSC 530 + + V+ SPS C Sbjct: 242 LILAVVGSPSNADLQC 257 >Z46937-2|CAB60996.1| 444|Caenorhabditis elegans Hypothetical protein F43C1.2b protein. Length = 444 Score = 28.3 bits (60), Expect = 5.8 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Frame = +3 Query: 315 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW---CKSRNGFPQRLMLP-LGTIGGLE 482 D GF+ EY++TR E+M + G T D W C R + P + L Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVWSVGCILAEMLSNRPLFPGKHYLDQLN 309 Query: 483 MQMYVIVSPSAPVCSC 530 + + V+ SPS C Sbjct: 310 LILAVVGSPSNADLQC 325 >U27124-1|AAA73482.1| 376|Caenorhabditis elegans MPK-1 protein. Length = 376 Score = 28.3 bits (60), Expect = 5.8 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Frame = +3 Query: 315 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW---CKSRNGFPQRLMLP-LGTIGGLE 482 D GF+ EY++TR E+M + G T D W C R + P + L Sbjct: 182 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVWSVGCILAEMLSNRPLFPGKHYLDQLN 241 Query: 483 MQMYVIVSPSAPVCSC 530 + + V+ SPS C Sbjct: 242 LILAVVGSPSNADLQC 257 >U23169-3|AAV58882.1| 284|Caenorhabditis elegans Regulator of g protein signalingprotein 3, isoform c protein. Length = 284 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = +3 Query: 288 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 380 +N + ++DM+ F P RR++E++ P Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134 >U23169-2|AAM98050.1| 290|Caenorhabditis elegans Regulator of g protein signalingprotein 3, isoform b protein. Length = 290 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = +3 Query: 288 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 380 +N + ++DM+ F P RR++E++ P Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140 >U23169-1|AAL02450.1| 363|Caenorhabditis elegans Regulator of g protein signalingprotein 3, isoform a protein. Length = 363 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = +3 Query: 288 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 380 +N + ++DM+ F P RR++E++ P Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213 >U03879-1|AAA18956.1| 444|Caenorhabditis elegans Sur-1 MAP kinase protein. Length = 444 Score = 28.3 bits (60), Expect = 5.8 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Frame = +3 Query: 315 DMQGFIPEYLSTRRVMESEMMPSGDGQTMVKDWW---CKSRNGFPQRLMLP-LGTIGGLE 482 D GF+ EY++TR E+M + G T D W C R + P + L Sbjct: 250 DHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDVWSVGCILAEMLSNRPLFPGKHYLDQLN 309 Query: 483 MQMYVIVSPSAPVCSC 530 + + V+ SPS C Sbjct: 310 LILAVVGSPSNADLQC 325 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,708,425 Number of Sequences: 27780 Number of extensions: 405595 Number of successful extensions: 1280 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1271 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1687292480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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