Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30175
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16350.1 68416.m02068 myb family transcription factor ; conta...    29   3.1  
At2g43840.1 68415.m05449 UDP-glucoronosyl/UDP-glucosyl transfera...    28   7.2  
At5g55200.1 68418.m06881 co-chaperone grpE protein, putative sim...    27   9.5  
At2g43840.2 68415.m05450 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.5  
At1g11280.3 68414.m01295 S-locus protein kinase, putative simila...    27   9.5  
At1g11280.2 68414.m01294 S-locus protein kinase, putative simila...    27   9.5  
At1g11280.1 68414.m01296 S-locus protein kinase, putative simila...    27   9.5  

>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 214 RLMSVNDKRLDMFDWTALCTNWSTERTPSSVA 309
           RL  V  ++L   DW  +  N+ T RTP+ VA
Sbjct: 145 RLFLVGLQKLGKGDWRGISRNYVTSRTPTQVA 176


>At2g43840.1 68415.m05449 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +1

Query: 139 IDVMSDKTVDAVVRIF-LGPKYDCM---GRLMSVNDKRLDMFDW--TALCTNWSTERTPS 300
           +D+  ++ +  V  +  +GP    M    ++ S ND  L++FD    ALCT+W  +R   
Sbjct: 205 LDLHEEELLSKVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPEG 264

Query: 301 SV 306
           SV
Sbjct: 265 SV 266


>At5g55200.1 68418.m06881 co-chaperone grpE protein, putative
           similar to chaperone GrpE type 2 [Nicotiana tabacum]
           GI:3851640; contains Pfam profile PF01025: co-chaperone
           GrpE
          Length = 302

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 443 LRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVL 288
           LR S + +  P  +    ++ R H   H T ++ V    SL  HG  D  VL
Sbjct: 16  LRSSFSSVVTPKRNQIPIVASRFHSLVHGTPNKLVAVPVSLRNHGTLDLNVL 67


>At2g43840.2 68415.m05450 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 214 RLMSVNDKRLDMFDW--TALCTNWSTERTPSSV 306
           ++ S ND  L++FD    ALCT+W  +R   SV
Sbjct: 234 QIKSDNDYDLNLFDLKEAALCTDWLDKRPEGSV 266


>At1g11280.3 68414.m01295 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 808

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 400 WSRTGGASLATDSLRDLCCPSVRLEVWRC 486
           W  TGG  L  + +   C P V +EV RC
Sbjct: 714 WLETGGVDLLDEDISSSCSP-VEVEVARC 741


>At1g11280.2 68414.m01294 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 820

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 400 WSRTGGASLATDSLRDLCCPSVRLEVWRC 486
           W  TGG  L  + +   C P V +EV RC
Sbjct: 726 WLETGGVDLLDEDISSSCSP-VEVEVARC 753


>At1g11280.1 68414.m01296 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains protein kinase domain,
           Pfam:PF00069; contains S-locus glycoprotein family
           domain, Pfam:PF00954
          Length = 830

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 400 WSRTGGASLATDSLRDLCCPSVRLEVWRC 486
           W  TGG  L  + +   C P V +EV RC
Sbjct: 736 WLETGGVDLLDEDISSSCSP-VEVEVARC 763


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,418
Number of Sequences: 28952
Number of extensions: 383315
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)