Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30174
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0695 + 5730932-5731198                                           31   1.1  
05_04_0286 + 19833114-19834053,19834149-19834165                       29   2.6  
08_01_0433 + 3794440-3794948,3795696-3796707                           28   6.0  
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571...    28   7.9  
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560     28   7.9  
04_03_1035 - 21887562-21890030                                         28   7.9  

>11_01_0695 + 5730932-5731198
          Length = 88

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 334 ACVRRGGNCDHRPGDCCHSSSCRCNL---WGSNC 426
           AC+  GG C  RP DCC +  C   +   +GS C
Sbjct: 53  ACLPAGGFCMFRPMDCCGNCGCLYPVGVCYGSRC 86


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 325 FRRACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 432
           F  AC   GG C H  GD  H   C C  W S   C
Sbjct: 251 FCGACRATGGVCGH-DGDS-HGDLCLCGDWNSTSNC 284


>08_01_0433 + 3794440-3794948,3795696-3796707
          Length = 506

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 319 YVFRRACVRRGGNCDHRPGDCCHSSSCR 402
           +  RRAC RRGG C+      C   S R
Sbjct: 18  HALRRACWRRGGRCEPGWRSRCEGDSAR 45


>08_01_0661 -
           5708088-5708131,5708217-5710048,5710527-5710625,
           5711015-5711508,5711579-5711632,5712597-5712683,
           5712684-5712776
          Length = 900

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 592 RTGK*ERNGSVL-CWRMLWLPVERRSSRLLELVAASEELRSVSPTPTSGR 446
           RTG  +RNG    CW+ L+LP++R    + +    +    S+S +  +GR
Sbjct: 8   RTG--DRNGDASPCWKYLFLPLDRVQVSIFQAPVPTWLAGSISDSIQTGR 55


>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
          Length = 546

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 251 ASSLPDHRLRDQYKRHEPILL 189
           A +LP H +RD  +RH P++L
Sbjct: 56  AGALPHHAMRDLARRHGPLML 76


>04_03_1035 - 21887562-21890030
          Length = 822

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +1

Query: 370 PGDCCHSSSCRCNLW-GSNCRCQRMG 444
           PG C  S SC C +W GS   C   G
Sbjct: 327 PGPCAPSKSCSCGVWSGSAQLCAGSG 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,802
Number of Sequences: 37544
Number of extensions: 294280
Number of successful extensions: 745
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)