Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30174
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    31   0.77 
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   7.1  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   7.1  

>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +1

Query: 253 CYGEDPADLQLLQDVGKRSSLIYVFRRACVRRGGNCDHRPGD-CCHSSSCRCNLWGSNCR 429
           CY EDP   Q  +    R++ +Y+  R C +  G C     +  CH     C  W     
Sbjct: 480 CYNEDPCCNQWSRQNECRTNTVYM-NRYCRKSCGLCQSNDNNRGCHDRHISCAYWRGQNF 538

Query: 430 CQR 438
           C R
Sbjct: 539 CTR 541


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 331 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 435
           R CV     C +   DC +++ C     G  C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 331 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 435
           R CV     C +   DC +++ C     G  C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,497,717
Number of Sequences: 27780
Number of extensions: 230386
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)