Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30174
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39430.1 68418.m04776 hypothetical protein                          29   3.8  
At3g29180.1 68416.m03657 expressed protein                             29   3.8  
At5g47850.1 68418.m05912 protein kinase, putative contains simil...    28   5.0  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    28   6.6  

>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 389 EWQQSPGRWSQLPPRRTQARLKT*ISDDRFPTSCNNC 279
           E  QS G W ++PP   + R +T   D R   + N C
Sbjct: 241 EKHQSSGSWCEIPPSNLKLRGETYFKDKRKHPAPNQC 277


>At3g29180.1 68416.m03657 expressed protein
          Length = 513

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 QQSPGRWSQLPPRRTQARLKT*ISDDRFPTSCNNC 279
           +QS G WS++PP   + R +T   D +   + N C
Sbjct: 246 KQSSGSWSEIPPSTFKLRGETYFKDKKKSPAPNQC 280


>At5g47850.1 68418.m05912 protein kinase, putative contains
           similarity to cytokinin-regulated kinase 1 [Nicotiana
           tabacum] gi|10998537|gb|AAG25966; contains protein
           kinase domain, Pfam:PF00069
          Length = 751

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 543 CGFRWSGGQVGCW 505
           CG RWS G V CW
Sbjct: 237 CGVRWSNGTVVCW 249


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 512 PT*PPLHRKPQHSPTQNGPV 571
           P+ PP+++ P+H PT   PV
Sbjct: 27  PSSPPVYKSPEHKPTLPSPV 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,537
Number of Sequences: 28952
Number of extensions: 215291
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)