Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30170
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    90   3e-19
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   2.1  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.4  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   8.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 39/66 (59%), Positives = 54/66 (81%)
 Frame = +1

Query: 499 KPSSTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDI 678
           K   +I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS++ L E+++ FED+VQS DI
Sbjct: 149 KAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDI 208

Query: 679 AAFNKI 696
           AA +K+
Sbjct: 209 AAMSKL 214



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
 Frame = +3

Query: 33  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 209
           M   D+ +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 210 ASYTSA 227
           A+Y  A
Sbjct: 61  ATYDLA 66



 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 26/62 (41%), Positives = 32/62 (51%)
 Frame = +2

Query: 323 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMEN 502
           +DLFGS                 + Y  KK+ KP  + KS + LDVKPWDDET M E+E 
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEK 149

Query: 503 QV 508
            V
Sbjct: 150 AV 151


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 726 YKYITCYGCLDFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 565
           ++ ITC   LD +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 80  HRNITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 571 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 693
           INK Q+M   E ++ ++DLL++   EF   + + D+    K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 9   KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 107
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 PPVLNPRLPPQQRKTTMTT 320
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,324
Number of Sequences: 5004
Number of extensions: 53177
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)