Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30170
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 83 3e-16
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 82 4e-16
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 81 9e-16
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.025
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186... 28 6.6
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 82.6 bits (195), Expect = 3e-16
Identities = 43/65 (66%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Frame = +1
Query: 511 TIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD-LLTEKIQE--FEDFVQSVDIA 681
+++MEGL WGASKLVPVGYGI KLQIM I DD VSVD L+ E + E +FVQS DI
Sbjct: 160 SVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIV 219
Query: 682 AFNKI 696
AFNKI
Sbjct: 220 AFNKI 224
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +3
Query: 45 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 215
D+ TA GL L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +2
Query: 401 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVALLKWKAFSGEPPNLCLLG 565
A K S K KSS+LLDVKPWDDETDMK++E V ++ + + L +G
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVG 177
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 82.2 bits (194), Expect = 4e-16
Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +1
Query: 514 IEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAA 684
++MEGLLWGASKLVPVGYGI KLQIM I DD VSVD L E + +F+QS DI A
Sbjct: 182 VKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVA 241
Query: 685 FNKI 696
FNKI
Sbjct: 242 FNKI 245
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/61 (39%), Positives = 40/61 (65%)
Frame = +3
Query: 33 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 212
+ + +V + GL L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 213 S 215
+
Sbjct: 82 A 82
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2
Query: 392 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVALLK 520
+A A K S K KSS+LLDVKPWDDETDM ++E V +K
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVK 183
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 81.0 bits (191), Expect = 9e-16
Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Frame = +1
Query: 514 IEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAA 684
++MEGLLWGASKLVPVGYGI KLQIM I DD VSVD L E + +++QS DI A
Sbjct: 166 VKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVA 225
Query: 685 FNKI 696
FNKI
Sbjct: 226 FNKI 229
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +3
Query: 45 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 209
+V + GL L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/43 (55%), Positives = 29/43 (67%)
Frame = +2
Query: 392 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVALLK 520
+A A K S K KSS+LLDVKPWDDETDM ++E V +K
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVK 167
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.025
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +3
Query: 66 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 209
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>06_01_0247 +
1863549-1863978,1865001-1865261,1865346-1866221,
1866344-1866813
Length = 678
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 511 CYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLV 404
C+LV+ ++ G + +LD+KE G W R+ +
Sbjct: 481 CFLVYDYMVNGCLSQYLDVKEGSGANVLDWPTRVSI 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,062,064
Number of Sequences: 37544
Number of extensions: 367799
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -