Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30170
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   7e-21
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   7e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               55   7e-08
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 54   9e-08
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.1  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 45/62 (72%), Positives = 53/62 (85%)
 Frame = +1

Query: 511 TIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFN 690
           +I+ +GLLWGASKLVP+ YGI KLQI  V+EDDK+S D L E+I +FEDFVQSVDIAAFN
Sbjct: 164 SIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVDIAAFN 223

Query: 691 KI 696
           KI
Sbjct: 224 KI 225



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 33  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 212
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 213 SY 218
           SY
Sbjct: 61  SY 62



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/62 (54%), Positives = 40/62 (64%)
 Frame = +2

Query: 323 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMEN 502
           +DLFGS                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME 
Sbjct: 101 IDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEK 160

Query: 503 QV 508
            V
Sbjct: 161 LV 162


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 114 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 218
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +1

Query: 544 SKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 660
           +KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 116 TKLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +1

Query: 547 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDF 660
           KLV + YG+ KLQI CVIED KVS D L +K+ EFEDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 66  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 161
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,378,827
Number of Sequences: 59808
Number of extensions: 404164
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)