BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30170 (731 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta id... 86 2e-17 At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF... 85 3e-17 At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (e... 76 2e-14 At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (e... 74 1e-13 At2g40660.1 68415.m05017 tRNA-binding region domain-containing p... 35 0.064 At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 29 3.2 At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot... 28 5.6 At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 28 7.3 At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 28 7.3 At1g68210.1 68414.m07792 two-component responsive regulator fami... 28 7.3 At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc... 27 9.7 >At1g30230.1 68414.m03698 elongation factor 1-beta / EF-1-beta identical to SP|P48006 Elongation factor 1-beta (EF-1-beta) {Arabidopsis thaliana} Length = 231 Score = 86.2 bits (204), Expect = 2e-17 Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 3/65 (4%) Frame = +1 Query: 511 TIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIA 681 +I+MEGL WGASKLVPVGYGI KLQI+C I DD VS+D + E+ ++ ++VQS DI Sbjct: 167 SIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIV 226 Query: 682 AFNKI 696 AFNKI Sbjct: 227 AFNKI 231 Score = 48.4 bits (110), Expect = 5e-06 Identities = 20/58 (34%), Positives = 34/58 (58%) Frame = +3 Query: 36 AVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 209 A ++ + GL L+++L +SY++GY S+ D+ VF + K P + + RWYN I Sbjct: 3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHI 60 Score = 48.4 bits (110), Expect = 5e-06 Identities = 21/39 (53%), Positives = 28/39 (71%) Frame = +2 Query: 392 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQV 508 +A + K S K KSS+L+D+KPWDDETDMK++E V Sbjct: 127 RAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAV 165 >At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF-1-beta, putative nearly identical to eEF-1beta [Arabidopsis thaliana] GI:398606 Length = 231 Score = 85.4 bits (202), Expect = 3e-17 Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 3/65 (4%) Frame = +1 Query: 511 TIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIA 681 +I+MEGL WGASKLVPVGYGI KL IMC I DD VS+D + E+ ++ ++VQS DI Sbjct: 167 SIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIV 226 Query: 682 AFNKI 696 AFNKI Sbjct: 227 AFNKI 231 Score = 50.0 bits (114), Expect = 2e-06 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = +3 Query: 36 AVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 209 A ++ + GL L+++L +SY++GY S+ D+ VF + K P + +V RW+N I Sbjct: 3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHI 60 Score = 48.4 bits (110), Expect = 5e-06 Identities = 21/39 (53%), Positives = 28/39 (71%) Frame = +2 Query: 392 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQV 508 +A + K S K KSS+L+D+KPWDDETDMK++E V Sbjct: 127 RAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAV 165 >At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) identical to elongation factor 1B alpha-subunit [Arabidopsis thaliana] GI:6686819 Length = 228 Score = 76.2 bits (179), Expect = 2e-14 Identities = 40/65 (61%), Positives = 46/65 (70%), Gaps = 3/65 (4%) Frame = +1 Query: 511 TIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFE---DFVQSVDIA 681 +++M GL WGASKLVPVGYGI KL IM I DD VSVD L E E +++QSVDI Sbjct: 164 SVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIV 223 Query: 682 AFNKI 696 AFNKI Sbjct: 224 AFNKI 228 Score = 49.6 bits (113), Expect = 2e-06 Identities = 22/58 (37%), Positives = 36/58 (62%) Frame = +3 Query: 45 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 218 D+ T +GL L ++LA K+Y+SG S DV+V+ V + P P+ +WY+ +AS+ Sbjct: 7 DLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASH 64 Score = 49.6 bits (113), Expect = 2e-06 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +2 Query: 401 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQV 508 A K +KK KSS+LL+VKPWDDETDMK++E V Sbjct: 127 AKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAV 162 >At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) identical to elongation factor 1B alpha-subunit [Arabidopsis thaliana] GI:6686821 Length = 224 Score = 73.7 bits (173), Expect = 1e-13 Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 3/64 (4%) Frame = +1 Query: 514 IEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFE---DFVQSVDIAA 684 +EM GL WGASKLVPVGYGI KL IM I DD VS D L E E +++QS DI A Sbjct: 161 VEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVA 220 Query: 685 FNKI 696 FNKI Sbjct: 221 FNKI 224 Score = 53.6 bits (123), Expect = 1e-07 Identities = 23/36 (63%), Positives = 28/36 (77%) Frame = +2 Query: 401 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQV 508 A K +KKP KSS+L+DVKPWDDETDMK++E V Sbjct: 123 AKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAV 158 Score = 46.4 bits (105), Expect = 2e-05 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = +3 Query: 45 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 215 D+ T +G+ + ++LA K+Y+SG S DV+V+ V P+ P+ +WY +AS Sbjct: 7 DLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS 63 >At2g40660.1 68415.m05017 tRNA-binding region domain-containing protein similar to SP|Q12904 Multisynthetase complex auxiliary component p43 [Contains: Endothelial-monocyte activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] {Homo sapiens}; contains Pfam profile PF01588: Putative tRNA binding domain Length = 389 Score = 34.7 bits (76), Expect = 0.064 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 9/57 (15%) Frame = +3 Query: 66 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 209 L LN LA KS + +G TPS ADV VF + + +PHV+RW N I Sbjct: 76 LEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWVNYI 132 >At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. identical to RPS2 (gi:13661831) Length = 909 Score = 29.1 bits (62), Expect = 3.2 Identities = 8/22 (36%), Positives = 15/22 (68%) Frame = -3 Query: 723 KYITCYGCLDFVKCSNVNRLYK 658 +Y++C+GC D+ C V+ + K Sbjct: 103 RYLSCFGCADYKLCKKVSAILK 124 >At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein / VPS11 family protein similar to Vacuolar protein sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo sapiens]; similar to Vacuolar biogenesis protein END1 (PEP5 protein) (Vacuolar protein sorting 11) (Swiss-Prot:P12868) [Saccharomyces cerevisiae] Length = 932 Score = 28.3 bits (60), Expect = 5.6 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +3 Query: 66 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGK 161 L DL Y YVS PSQA V + EQ GK Sbjct: 495 LEDLGNYDEALQYVSSLEPSQAGVTI-EQYGK 525 >At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7 (SPL7) identical to squamosa promoter binding protein-like 7 [Arabidopsis thaliana] GI:5931635; contains Pfam profile PF03110: SBP domain Length = 775 Score = 27.9 bits (59), Expect = 7.3 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 120 PSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTAH*PPVLNPRLPP 293 P + D+Q V P+ + W + + + ER Q H PPVL+P LPP Sbjct: 10 PPEMDIQPPALVNDDPSTYSSALWDW-GDLLDFAADERLLVDQ--IHFPPVLSPPLPP 64 >At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7 (SPL7) identical to squamosa promoter binding protein-like 7 [Arabidopsis thaliana] GI:5931635; contains Pfam profile PF03110: SBP domain Length = 801 Score = 27.9 bits (59), Expect = 7.3 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 120 PSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTAH*PPVLNPRLPP 293 P + D+Q V P+ + W + + + ER Q H PPVL+P LPP Sbjct: 10 PPEMDIQPPALVNDDPSTYSSALWDW-GDLLDFAADERLLVDQ--IHFPPVLSPPLPP 64 >At1g68210.1 68414.m07792 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain Length = 663 Score = 27.9 bits (59), Expect = 7.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 595 VIEDDKVSVDLLTEKIQEFEDFVQSVDIAA 684 +I+ D S+ LT +Q+F V SVD+A+ Sbjct: 17 LIDHDTASIASLTSMLQQFSKRVMSVDVAS 46 >At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fructofuranosidase, putative similar to beta-fructofuranosidase GI:18324 from [Daucus carota] Length = 591 Score = 27.5 bits (58), Expect = 9.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +3 Query: 66 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANL 179 +N+ + + ++ V G TP+QADV+V VG A + Sbjct: 386 MNNHDIKMGQRIEVKGITPAQADVEVTFYVGSLEKAEI 423 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,304,306 Number of Sequences: 28952 Number of extensions: 287818 Number of successful extensions: 813 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 786 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 808 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1604469728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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