Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30168
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    28   1.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.2  
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...    26   5.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   6.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   9.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   9.0  

>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -1

Query: 652 SYTYPINCFNYEHKSWLASIKCFTDTQYYYTRVIC 548
           SY YP + F   H  W      +TDT Y+     C
Sbjct: 193 SYFYPQDSFLVSHAEWQDGNGIWTDTDYFAAMADC 227


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 669 FFIMIKVIHTR*TVSTMNTNRGSLLLNVSLIHSTT 565
           FF+ + +I TR   + MNT  G  L++ SL    T
Sbjct: 15  FFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGT 49


>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 250 LPCVSVCVKAELHSLSGRRR 191
           +PC+S CV AEL  L  R R
Sbjct: 97  IPCISDCVMAELEKLGIRYR 116


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 125 LQVRELL-SVDCASTLIPDGLDGLLVL 48
           LQ+R L+ S++CA  L+P G++ L +L
Sbjct: 712 LQIRHLVFSLECAIDLMPPGVETLALL 738


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 39  LGMKYEEAVETIRDQRRGAINAKKLS--YLEKYRPKSRLKKNG-HKNN 173
           L MK     +T+  Q    I   K S  YLE+   K +L+KNG  K+N
Sbjct: 26  LSMKRLTQNQTVHQQLHSNIEESKKSIIYLEERLEKLKLRKNGVRKSN 73


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 640 PINCFNYEHKSWLASIKCFTDTQYYYTRVICH*NTKVSSEE 518
           P+  F  E + WL+SIK FT   +    ++C  N  V++E+
Sbjct: 166 PVGGFG-EIEYWLSSIKVFTVAAFIVNGILC--NLGVNNEK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,771
Number of Sequences: 5004
Number of extensions: 52773
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)