Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30168
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-...    78   6e-15
AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative pren...    78   6e-15
U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical ...    28   6.3  

>U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-1
           protein protein.
          Length = 190

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 5/66 (7%)
 Frame = +3

Query: 3   RAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKKLSYLEKYRPKSRLKK-----NGHK 167
           RAPV+VAIALIE GMKYE+AVE IR QRRGA+N K+L +LE Y+    L++     +G +
Sbjct: 125 RAPVLVAIALIEAGMKYEDAVEMIRTQRRGALNQKQLKFLETYKANGELRRLRGNVDGKQ 184

Query: 168 NNCCVQ 185
            +CC+Q
Sbjct: 185 KSCCIQ 190


>AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative
           prenylated protein tyrosinephosphatase protein.
          Length = 190

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 5/66 (7%)
 Frame = +3

Query: 3   RAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKKLSYLEKYRPKSRLKK-----NGHK 167
           RAPV+VAIALIE GMKYE+AVE IR QRRGA+N K+L +LE Y+    L++     +G +
Sbjct: 125 RAPVLVAIALIEAGMKYEDAVEMIRTQRRGALNQKQLKFLETYKANGELRRLRGNVDGKQ 184

Query: 168 NNCCVQ 185
            +CC+Q
Sbjct: 185 KSCCIQ 190


>U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical
           protein C16D9.5 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 628 NSLSGMYNFNHNKERKKYNISINKIHSQLICRLF 729
           +S+  +Y F HN +   Y++ +NK ++Q I + F
Sbjct: 160 HSIGSVYKFYHNAKFILYSLGLNKFYTQTIKKQF 193


>AF125960-3|AAD14737.1|  446|Caenorhabditis elegans Hypothetical
           protein T12B3.1 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 12  VMVAIALIELGMKYEEAVETIRDQRRGAINAK-KLSYLEKYR 134
           V+ A  +  LGM   +AV+T+R +R  A+ +K ++  L ++R
Sbjct: 187 VIAAWMMYALGMSPSQAVDTVRSRRAKAVQSKEQVKTLHEFR 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,348
Number of Sequences: 27780
Number of extensions: 300036
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)