Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30167
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    46   7e-06
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    27   1.9  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   2.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.8  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = -2

Query: 497 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
           GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P
Sbjct: 55  GTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVP 92



 Score = 32.3 bits (70), Expect = 0.068
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 387 VPVRRIPQRYVIGTST-RISLGNFKLPKHFNDDYFKKNKK 271
           VP+RR+  RYVI TS  +I +    + K F   YF K K+
Sbjct: 91  VPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYFAKQKR 129


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
 Frame = -1

Query: 405 TFCFQFVPVRRIP--QRYVIGTSTRI-SLGNFKLPKHFNDDYFKKNKKCVKRTAN-AKRV 238
           T C Q++  ++IP  Q  +I  S  + +   FK+ K    DY +K   C+    N +  +
Sbjct: 230 TICLQYIEAKKIPELQPLIISISANLKATKKFKIEKKKAQDYGRKLYFCMNPLRNKSSAL 289

Query: 237 MTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSE 139
                 ++ +T +   AK     S  L   P E
Sbjct: 290 YLKRKAEEESTNNNKWAKKFSTSSNVLDKNPFE 322


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 264 KRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDS 85
           KR A A+R   SL +++ N F  ++ + I R  +R  +K   P P    S++    P  +
Sbjct: 48  KRRALARR--NSLARRRSNVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTN 105

Query: 84  AR 79
           ++
Sbjct: 106 SQ 107


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 318 KLPKHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQS 166
           +L  HF  ++ +KNKK +   A A R + +  ++ + T   S+   I   S
Sbjct: 234 RLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDS 284


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 318 KLPKHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQS 166
           +L  HF  ++ +KNKK +   A A R + +  ++ + T   S+   I   S
Sbjct: 234 RLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIEIDS 284


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 143 RSPTRQEGAPRIPQSGLRTPLEPISPSVRF 54
           RSP R     R+  S    P  P+SPSV +
Sbjct: 218 RSPARTPSPIRLYSSDALRPQSPLSPSVEY 247


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 309 KHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKR 211
           K F+D+   + KK V+ +A+A ++    PQKKR
Sbjct: 342 KVFHDEKLNELKKQVEISASAAQLNGLYPQKKR 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,413
Number of Sequences: 5004
Number of extensions: 62821
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)