Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30167
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 54 8e-08
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 54 1e-07
02_02_0470 - 10700092-10700505 30 2.0
10_08_0951 - 21769342-21769752 29 4.6
10_02_0100 + 5296783-5297568 29 4.6
08_01_0897 - 8839134-8839718 28 6.1
06_01_0767 + 5732573-5732670,5733223-5733278,5733928-5734007,573... 28 6.1
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 6.1
02_03_0401 - 18604244-18604303,18605059-18605346,18605459-186055... 28 8.0
01_05_0760 - 24977608-24978708 28 8.0
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = -2
Query: 497 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
GTV ILLAGR+ GKRVV + L SGLLL+TGPF N P
Sbjct: 78 GTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVP 116
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKC-VKRT 256
VP+RR+ Q YVI TST++ + K+ K F+D YF ++KK K+T
Sbjct: 115 VPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYFARDKKAKAKKT 158
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -3
Query: 268 RQTYSKRKEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAA 95
++ +K+ EG+ +F T+KE K +P + +K DQK VD +IKAI PD LK+
Sbjct: 151 KKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD-------LKSY 201
Query: 94 FGLRSSQYP 68
G R+S++P
Sbjct: 202 LGARNSRWP 210
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/39 (69%), Positives = 28/39 (71%)
Frame = -2
Query: 497 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
GTV ILLAGR GKRVV + L SGLLLVTGPF N P
Sbjct: 101 GTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVP 139
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/66 (48%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = -3
Query: 256 SKRKEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLR 83
+K+ EG+ +F T+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR
Sbjct: 178 AKKTEGE-LFETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLR 232
Query: 82 SSQYPH 65
PH
Sbjct: 233 DGDKPH 238
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKK 271
VP+RR+ Q YVI TST++ + + K F+D YF ++KK
Sbjct: 138 VPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYFSRDKK 175
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 506 LKIGTVCILLAGRHAGKRVVLVGILPSG 423
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 506 LKIGTVCILLAGRHAGKRVVLVGILPSG 423
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>10_02_0100 + 5296783-5297568
Length = 261
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 165 TRL*SKPSEPDPTRRCSADTSKRPSDSARANIPIGA 58
TR SKP P PT+ SA + +D A A+ P A
Sbjct: 142 TRSSSKPPAPAPTKTASASDHAKKTDMAAAHKPAPA 177
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 84 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 242
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>06_01_0767 +
5732573-5732670,5733223-5733278,5733928-5734007,
5735334-5735372,5735563-5735950,5736049-5737562
Length = 724
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 149 SHRSPTRQEGAPRIPQSGLR 90
SHR P QEGAP P S +R
Sbjct: 157 SHRWPEAQEGAPAFPPSTMR 176
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 213 RNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARAN 73
+NT LS+AK + +S ++ KPS + + +KR SD+ R +
Sbjct: 639 KNTRKLSNAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGH 685
>02_03_0401 -
18604244-18604303,18605059-18605346,18605459-18605562,
18605640-18605686,18605790-18605860,18606482-18606601,
18606686-18606856,18607304-18607393,18608949-18609041,
18609141-18609461
Length = 454
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 132 PTRRCSADTSKRPSDSARANIPIGALLNLRIRN 34
P C A TSK P+ IP+G N RN
Sbjct: 150 PFHNCGASTSKLPAHVYHKKIPMGEAANHYFRN 182
>01_05_0760 - 24977608-24978708
Length = 366
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -1
Query: 255 ANAKRVMTSLPQKKRNT---FHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDS 85
A+ + + +SL +T +H +S+ + R+ + + P+ P RR SA + P+D+
Sbjct: 202 ADTRTLFSSLSFSSDSTSEFYHTNSSSSLARKGHK--NAPARRPPARRASARITSDPADA 259
Query: 84 ARANIPIGA 58
R + + A
Sbjct: 260 FRPVVSVAA 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,175,518
Number of Sequences: 37544
Number of extensions: 481023
Number of successful extensions: 1490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -