Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30167
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0) 55 5e-08
SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2) 34 0.12
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 30 1.5
SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35) 28 8.2
SB_32102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
Length = 112
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = -3
Query: 253 KRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQ 74
K+K +D+F E+ PSEQR DQK VD+ ++ I A P+ ++ YL + F LR Q
Sbjct: 49 KKKRSEDMFEEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQ 105
Query: 73 YPH 65
+PH
Sbjct: 106 FPH 108
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YFKKNKKCVKRT 256
VP+RRIPQ YVI TST I + + KLP+H F D+ YFK K KR+
Sbjct: 8 VPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYFKGEPKKKKRS 53
>SB_3697| Best HMM Match : Mucin (HMM E-Value=4.2)
Length = 120
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = -1
Query: 288 FKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSAD 109
+ ++ KC + T AK T+ P T + P ++ +KP T S+
Sbjct: 26 YTRDDKCPRNTRTAKSHTTTTPSTSSGTTSKPTRVPSNPTMAKVITKPRTTSSTPGSSST 85
Query: 108 TSKRPSDSARANIPI 64
T ++P+ + + IP+
Sbjct: 86 TPQKPATTEHSTIPL 100
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 212 EIRSI*AAQNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGLRTPL 81
E++ Q + + +G ++ H QEG ++PQ G +TP+
Sbjct: 657 EVQGQEQGQGQDQSHVQGQEEGHSQDQGQEGTNQVPQQGEKTPI 700
>SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 630 RMGEPEQYPSNVGSPSTPLRRKSVLHLVAVHSASMYAGSDPPEDRN 493
R EP ++P + +P PL+ + L L + H+ PP+ +N
Sbjct: 52 RHAEPSEFPQDTQNPQIPLQTRRTLRLPSRHAE---PSDSPPDTQN 94
>SB_56504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 285 KKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 106
+KN K VK + N+ T L + ++ PI+ T L K R CS +
Sbjct: 53 QKNAKAVKPSGNSTSTQTELKSSMKIRKKRNTLIPIKESDTSLQKKRK----VRSCSPSS 108
Query: 105 SKRPS 91
S+ PS
Sbjct: 109 SRSPS 113
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 198 LSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSA 82
L KP R++T SKP+EPD +RR S S +A
Sbjct: 1001 LDHTKPPLRKTTSNDSKPTEPDSSRRTYRAASMDASTTA 1039
>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
Length = 568
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 639 EVRRMGEPEQYPSNVGSPSTPLRRKSVLHLVAVHSASMYAG 517
+V+ + E + +VGS + P+R +SVL + HS AG
Sbjct: 424 DVQNVAETMRELRDVGSNTCPVRPESVLEFLRKHSGMFAAG 464
>SB_32102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 312 PKHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQ 169
P FND F K+ V+R ANA ++ ++ T L S P+R +
Sbjct: 29 PDSFNDGEFDDIKRAVERRANAAEPEPAVSSEEEPTTKLFSC-PVRER 75
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = -1
Query: 387 VPVRRIP----QRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTANAKRVMTSLPQ 220
+P +R+P ++ + R++LG+ HF+DD + + ++T A+ ++ L
Sbjct: 682 LPRKRLPVPISSTHIAPPTERVALGHHDKRVHFDDDDHWRARDDERKTRKARDIIEELLG 741
Query: 219 KKR---NTFHLSSAKPIRR 172
K+R +T+H RR
Sbjct: 742 KRRKVPDTWHTPLGMKERR 760
>SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -1
Query: 534 ASMYAGSDPPEDRNCLHSPRW*TCRQEGCTCWNSAQRSAFSYWTFCFQFVPVRRIPQRYV 355
A+++ DP + +N LHS + G C S RS+ + F V R+ + +
Sbjct: 122 AALHGRKDPIDGKNALHSHSF-----NGFICHASRSRSSSNISAF------VSRVSECII 170
Query: 354 IGTSTRISLGNFKL 313
+G I G FKL
Sbjct: 171 MGMPMNIGTGMFKL 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,164,062
Number of Sequences: 59808
Number of extensions: 512354
Number of successful extensions: 1955
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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