Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30167
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    65   4e-11
Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical pr...    35   0.048
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    33   0.25 
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    33   0.25 
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   0.60 
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   0.60 
Z74030-3|CAA98437.2|  395|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epiderm...    28   5.5  
U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epiderm...    28   5.5  
U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    28   5.5  
AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like ...    28   5.5  
AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like ...    28   5.5  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 31/63 (49%), Positives = 40/63 (63%)
 Frame = -3

Query: 250 RKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQY 71
           +K G +IFA+ K +Y  SEQRK D KTVD  ++ AI   P+ K L GYL   F L  +QY
Sbjct: 152 QKTGKNIFASGKTEYTVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQY 211

Query: 70  PHR 62
           PH+
Sbjct: 212 PHK 214



 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 27/40 (67%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = -2

Query: 497 GTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCP 381
           GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  P
Sbjct: 74  GTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFP 113



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = -1

Query: 384 PVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTAN 250
           P+RRI Q +VI TS ++++   K+P+H ND+YFK+     K   N
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQKTGKN 157


>Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical
           protein C38C10.2 protein.
          Length = 493

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 479 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPYAV 372
           LA R+ GKRVV V IL S LL +  P A  +  YA+
Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNPVAARTSEYAL 139


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 303  FNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAK 184
            +ND   +  +  V  +ANA R+MT LP    N  HLS+A+
Sbjct: 1874 YNDSTMRLEQDLVWLSANACRIMTQLPINPSNIEHLSTAE 1913


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 303  FNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAK 184
            +ND   +  +  V  +ANA R+MT LP    N  HLS+A+
Sbjct: 1810 YNDSTMRLEQDLVWLSANACRIMTQLPINPSNIEHLSTAE 1849


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect(2) = 0.60
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 312 PKHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLS-SAKPIRRQ 169
           PK   D   ++ +        ++RV    P++KRN  H S S  P+RR+
Sbjct: 410 PKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRRR 458



 Score = 23.4 bits (48), Expect(2) = 0.60
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 192 SAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARANIPI 64
           S  P R++  R    PS+  PTRR S    +R    +   +P+
Sbjct: 494 SPSPERQRKRR---SPSDSPPTRRLSTSPIRRRRSPSPNKLPV 533


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect(2) = 0.60
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 312 PKHFNDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLS-SAKPIRRQ 169
           PK   D   ++ +        ++RV    P++KRN  H S S  P+RR+
Sbjct: 410 PKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRRR 458



 Score = 23.4 bits (48), Expect(2) = 0.60
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 192 SAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARANIPI 64
           S  P R++  R    PS+  PTRR S    +R    +   +P+
Sbjct: 494 SPSPERQRKRR---SPSDSPPTRRLSTSPIRRRRSPSPNKLPV 533


>Z74030-3|CAA98437.2|  395|Caenorhabditis elegans Hypothetical
           protein D1054.5 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 406 PVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRWVGS 519
           P+  S P G  P+    LPA   A+    +P F+W  S
Sbjct: 111 PLPLSSPTGVSPSQYKTLPAGFGAKHQSNIPRFQWQSS 148


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 439 PTSTTLLPACLPARRMQTVPIFRWVGSCVHAC 534
           PT+ + +PAC PA   Q V       +C+ AC
Sbjct: 293 PTTASCIPACQPACTPQCVQAVTTTETCIPAC 324


>U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform b protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 NSGGGADHIALRNTAYGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQT 492
           +S GG+      N  Y    K+   +   +PL R+PT  T+L +  PA  ++T
Sbjct: 661 SSSGGSGQQGYVNPKYQRRSKSASRLLDHQPLHRVPTG-TVLQSRTPANAIRT 712


>U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 NSGGGADHIALRNTAYGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQT 492
           +S GG+      N  Y    K+   +   +PL R+PT  T+L +  PA  ++T
Sbjct: 661 SSSGGSGQQGYVNPKYQRRSKSASRLLDHQPLHRVPTG-TVLQSRTPANAIRT 712


>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 NSGGGADHIALRNTAYGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQT 492
           +S GG+      N  Y    K+   +   +PL R+PT  T+L +  PA  ++T
Sbjct: 663 SSSGGSGQQGYVNPKYQRRSKSASRLLDHQPLHRVPTG-TVLQSRTPANAIRT 714


>AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like
           protein ZEN-4b protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 NSGGGADHIALRNTAYGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQT 492
           +S GG+      N  Y    K+   +   +PL R+PT  T+L +  PA  ++T
Sbjct: 661 SSSGGSGQQGYVNPKYQRRSKSASRLLDHQPLHRVPTG-TVLQSRTPANAIRT 712


>AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like
           protein ZEN-4a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 NSGGGADHIALRNTAYGHELKAKGPVTKSRPLGRIPTSTTLLPACLPARRMQT 492
           +S GG+      N  Y    K+   +   +PL R+PT  T+L +  PA  ++T
Sbjct: 661 SSSGGSGQQGYVNPKYQRRSKSASRLLDHQPLHRVPTG-TVLQSRTPANAIRT 712


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
            protein R10F2.6 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 267  VKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRR 121
            +++T    + MT+  ++   + +    KPIRR+  RL  KP +P   +R
Sbjct: 1029 LRKTDRLHQAMTASEERDERSPYFDG-KPIRRKPLRLGDKPRDPKRPKR 1076


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 417 KQTAGQNSNK-YNPLACMSTSEENANSSYLQVGRILRTCLLNGR 545
           K + G   +K YN L  +S   +N NS    V   LR C+++ R
Sbjct: 847 KSSCGDTLSKCYNRLVVLSKDLDNVNSRLSAVEVFLRLCMMDTR 890


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 417 KQTAGQNSNK-YNPLACMSTSEENANSSYLQVGRILRTCLLNGR 545
           K + G   +K YN L  +S   +N NS    V   LR C+++ R
Sbjct: 847 KSSCGDTLSKCYNRLVVLSKDLDNVNSRLSAVEVFLRLCMMDTR 890


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = -3

Query: 271 VRQTYSKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAF 92
           ++++  K+K+ DD+   KKE    +E+       + E +I  + ++ +KKV +   KA+ 
Sbjct: 12  IKRSQPKKKDADDL-NKKKELSTITEESLRRYDELREKMIGKVESKIEKKVKKNKKKASI 70

Query: 91  GLRSSQ 74
            + +S+
Sbjct: 71  EILASR 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,224
Number of Sequences: 27780
Number of extensions: 374476
Number of successful extensions: 1227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)