Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30167
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 54 1e-07
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 54 1e-07
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 53 2e-07
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 33 0.18
At5g52730.1 68418.m06545 heavy-metal-associated domain-containin... 31 0.95
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 30 1.3
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 30 1.3
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.7
At3g10440.1 68416.m01252 hypothetical protein 29 2.2
At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing pr... 29 3.8
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 28 6.7
At5g53930.1 68418.m06710 expressed protein 28 6.7
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 28 6.7
At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6) i... 27 8.9
At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6) i... 27 8.9
At3g08670.1 68416.m01007 expressed protein 27 8.9
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 27 8.9
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/52 (57%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = -2
Query: 524 TQDPTHLKI----GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
T PT L+ GTV I+LAGR GKRVV + L SGLLLVTGPF N P
Sbjct: 79 TAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVP 130
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = -3
Query: 274 EVRQTYSKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAA 95
+V + K+ EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A
Sbjct: 163 KVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE---LKTYLGAR 219
Query: 94 FGLRSSQYPH 65
F L+ PH
Sbjct: 220 FSLKQGMKPH 229
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF-----KKNKKCVKRTANA-KRVMTSL 226
VP+RR+ Q YVIGTST++ + L K F+D YF KK KK A K +
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEI 187
Query: 225 PQKKRN 208
PQ K++
Sbjct: 188 PQVKKD 193
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = -2
Query: 515 PTHLKI----GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
PT LK GTV I+LAGR GKRVV + L SGLLLVTGPF N P
Sbjct: 82 PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVP 130
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = -3
Query: 274 EVRQTYSKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAA 95
+V + K+ EG+ A K+EK +++K DQKTVD A+IK+I A P+ KV YL A
Sbjct: 163 KVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV---YLGAR 219
Query: 94 FGLRSSQYPH 65
F L PH
Sbjct: 220 FSLSQGMKPH 229
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF-----KKNKKCVKRTANA-KRVMTSL 226
VP+RR+ Q YVIGTST+I + K F+D YF KK KK A K +
Sbjct: 129 VPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEI 187
Query: 225 PQKKR 211
PQ+K+
Sbjct: 188 PQEKK 192
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/39 (66%), Positives = 28/39 (71%)
Frame = -2
Query: 497 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 381
GTV I+LAGR GKRVV + L SGLLLVTGPF N P
Sbjct: 92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVP 130
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = -3
Query: 274 EVRQTYSKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAA 95
+V + K+ EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A
Sbjct: 163 KVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGAR 219
Query: 94 FGLRSSQYPH 65
F L+ PH
Sbjct: 220 FSLKQGMKPH 229
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -1
Query: 387 VPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF-----KKNKKCVKRTANA-KRVMTSL 226
VP+RR+ Q YVIGTST++ + L K F+D YF KK KK A K +
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEI 187
Query: 225 PQKKRN 208
PQ K++
Sbjct: 188 PQGKKD 193
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = -3
Query: 250 RKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQY 71
+K G ATK K P+ RK ++TV + AIG P+KKV R + F +SS
Sbjct: 1346 KKGGRKPAATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSSSV 1403
Query: 70 PHRCA 56
R A
Sbjct: 1404 MSRLA 1408
>At5g52730.1 68418.m06545 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 185
Score = 30.7 bits (66), Expect = 0.95
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -1
Query: 300 NDDYFKKNKKCVKRTANAKRVMTSLPQKKRN--TFHLSSAKPIRRQSTRL*SKPS-EPDP 130
N + KK KK K A P++ RN T + +P + +S +PS EP+P
Sbjct: 87 NYEMTKKLKKICKHVAIIAAEPIREPEQNRNPVTRREPNREPEQNRSRVTRREPSREPEP 146
Query: 129 TRRCSADTSKRPSDSARANIP 67
R A RP +R +IP
Sbjct: 147 NRAPLARRESRPRTHSRPSIP 167
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = -1
Query: 228 LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARANIPIGA 58
LP+K +T S++P + S + KP + R S++++++ SDSAR +I G+
Sbjct: 60 LPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSESARKSSDSARKSISSGS 112
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 441 WNSAQRSAFSYWTFCFQFVPVRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVK 262
W + + F +W +P R I + I ++ L FK PKH+++D K + +
Sbjct: 230 WEDMKPALFDFWQN--HVLPAREIYNNFDI-KDPQVKLREFK-PKHWHEDCKKIMRGAER 285
Query: 261 RTANAKRV 238
+ANA R+
Sbjct: 286 ISANANRL 293
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 607 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 518
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1
Query: 183 PIRRQSTRL*SKPSEPDPTRRCSADTSKRPSDSARA---NI-PIGALLNL 46
P+RR+S RL S+ EP + S +T+KR + R+ NI +G + NL
Sbjct: 311 PLRRRSARLKSQEPEPSESFHDSIETTKRRRSAIRSAMFNIQELGVIQNL 360
>At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429:Methyl-CpG binding
domain
Length = 155
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 324 NFKLPKHFNDDYFKKNKKCVKRTANAK 244
+F++PK +D+Y KK + VKR ++K
Sbjct: 120 SFQIPKPLDDNYVKKRTRPVKRRKSSK 146
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 274 EVRQTYSKRKEGDDIFATKKEKYVPSE 194
EVR TYSK KEG + + +K + PSE
Sbjct: 796 EVRMTYSKEKEG--LLSVQKSIWRPSE 820
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -1
Query: 300 NDDYFKKNKKCVKRTANAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRR 121
+D KK K+ ++ N + + +KR LSS+ QS + SE D +R
Sbjct: 88 DDRLLKKKKRSKRKDENVGKKKKKVVSRKRRKRDLSSSSTSSEQSD---NDGSESDDGKR 144
Query: 120 CSADTSKR 97
S D +R
Sbjct: 145 WSRDRGRR 152
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 641 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 540
W+ E Q ++PQ V L H G+ C +WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
>At4g23130.2 68417.m03334 receptor-like protein kinase 6 (RLK6)
identical to receptor-like protein kinase 6 [Arabidopsis
thaliana] GI:13506749; contains Pfam domain PF00069:
Protein kinase domain
Length = 663
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 600 LRGTVLVPPFFSPPICFTTTVSF 668
+ GTVL PP +PP+ +T SF
Sbjct: 248 IEGTVLPPPVSAPPLPLVSTPSF 270
>At4g23130.1 68417.m03333 receptor-like protein kinase 6 (RLK6)
identical to receptor-like protein kinase 6 [Arabidopsis
thaliana] GI:13506749; contains Pfam domain PF00069:
Protein kinase domain
Length = 659
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 600 LRGTVLVPPFFSPPICFTTTVSF 668
+ GTVL PP +PP+ +T SF
Sbjct: 248 IEGTVLPPPVSAPPLPLVSTPSF 270
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 117 STFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSPS 245
S+F SGR+P +++ SS S +R S + S A+ S+P+
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPT 210
>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
protein
Length = 571
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 443 VGILPSGLLLVTGPFAFNSCPYAVFLSAM*SAPPPEFHSATSNCQNTSM 297
+ ILP+ + V+ F S P + + + +A PPEF S + +TS+
Sbjct: 321 INILPTPVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSL 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,903
Number of Sequences: 28952
Number of extensions: 354833
Number of successful extensions: 1130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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