Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30166
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 120 1e-27
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 113 8e-26
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 31 0.93
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 29 2.1
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 29 3.7
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 28 6.5
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 6.5
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 27 8.7
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 120 bits (288), Expect = 1e-27
Identities = 57/90 (63%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GSLAKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 422
G KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 94 GRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYM 153
Query: 423 SSPCHIEVCLSEREDAVARVAPTDDAPAKK 512
SSPCH+E+ LSE+E+AV + T AP ++
Sbjct: 154 SSPCHVELILSEKEEAVKKEPETTIAPRRQ 183
Score = 100 bits (240), Expect = 8e-22
Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 13/97 (13%)
Frame = +1
Query: 4 MGRYSREPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYL 147
MG+YS EP NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYL 60
Query: 148 KNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWP 255
++VI K+ IPFRR+ GGVGR AQ K + QGRWP
Sbjct: 61 EDVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWP 97
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 113 bits (273), Expect = 8e-26
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +3
Query: 243 GSLAKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYM 422
G KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYM
Sbjct: 82 GRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYM 141
Query: 423 SSPCHIEVCLSEREDAVARVAPTDDAPAKKS 515
SSPCHIE+ LSE+E+ V + P A+K+
Sbjct: 142 SSPCHIELILSEKEEPVKK-EPESQIAARKA 171
Score = 113 bits (271), Expect = 1e-25
Identities = 55/85 (64%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 183
M +YSRE +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPF 60
Query: 184 RRFNGGVGRCAQAK-QFGTTQGRWP 255
RR+ GGVGR AQAK + QGRWP
Sbjct: 61 RRYCGGVGRTAQAKSRHSNGQGRWP 85
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 SLAKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 380
+L K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1030 ALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>04_01_0568 -
7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -1
Query: 551 SSPFDAQAFSWKAFFRW--GIISRGYPGDSIFA 459
S+P+DA ++ +A F W ++S+GY DS+ A
Sbjct: 229 STPYDAASWLSRATFSWINPLVSKGYASDSLAA 261
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 286 NNCKRNSADFLASDPVLCQTALLEHSDQRRR*SDGMEYTLSFQSR 152
N+ + D LAS+ ++ +TA+L D + M++T SF+ R
Sbjct: 452 NSARFPVVDILASEDIVTETAVLNSFDLATMKENEMDFTSSFELR 496
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +1
Query: 1 IMGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIP 180
++ + + + K C RGS +R+H KN + P RR + +++ + I
Sbjct: 530 VLAKMAERDEGTLKDCAQRGSFVRLHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKIS 589
Query: 181 FRRFN 195
F+
Sbjct: 590 VLHFS 594
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 453 SEREDAVARVAPTDDAPAKK 512
+E E+A A+ AP +APAKK
Sbjct: 20 AEEEEAAAKTAPAAEAPAKK 39
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 102 NGNQKDAAPSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVWHNTGSLAK 257
NGN D + PQK ++R Y P +RRR + CS+ + S +K
Sbjct: 637 NGNG-DTIGATSFFPQKTKIEKRKYLSPVTKRRRLTSCSNDQTSRRSFSFSK 687
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,159
Number of Sequences: 37544
Number of extensions: 345584
Number of successful extensions: 1055
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -