Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30166
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 130 6e-31
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 118 3e-27
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 27 7.8
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 27 7.8
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 130 bits (315), Expect = 6e-31
Identities = 69/105 (65%), Positives = 78/105 (74%), Gaps = 3/105 (2%)
Frame = +3
Query: 231 WHNT-GSLAKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGR 407
W+ T G KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGR
Sbjct: 78 WNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGR 137
Query: 408 INPYMSSPCHIEVCLSEREDAVARVAPTDDA--PAKKSFPRKSLR 536
INPYMSSPCHIEV L+E+ED V++ PTDDA KK RK R
Sbjct: 138 INPYMSSPCHIEVILAEKEDVVSK--PTDDAAPKVKKESKRKQRR 180
Score = 129 bits (312), Expect = 1e-30
Identities = 57/81 (70%), Positives = 67/81 (82%)
Frame = +1
Query: 13 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 192
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
Query: 193 NGGVGRCAQAKQFGTTQGRWP 255
+GG+GR AQ KQ+ TTQGRWP
Sbjct: 66 HGGIGRAAQTKQWNTTQGRWP 86
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 118 bits (284), Expect = 3e-27
Identities = 61/89 (68%), Positives = 68/89 (76%), Gaps = 2/89 (2%)
Frame = +3
Query: 276 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 455
L LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125
Query: 456 EREDAVARVAPTDDA--PAKKSFPRKSLR 536
E+ED V++ PTDDA KK RK R
Sbjct: 126 EKEDVVSK--PTDDAAPKVKKESKRKQRR 152
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/60 (70%), Positives = 49/60 (81%)
Frame = +1
Query: 13 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 192
YSR P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 198 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 73
AV A W L +F+ + FE+ NS + S CHC +C +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -3
Query: 438 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 310
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 204 WSLCSSKAVWHNTGSLAKKSAEFLLQLLRNAESNADNKTL 323
WSLC + V S + S + LL L+++E+ +D+K +
Sbjct: 397 WSLCVNSKVHCELISFSTTSNQCLLSTLKSSETASDSKKI 436
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -3
Query: 186 TEWN---TLFLFNHVF--EVTNSTTERHLSDCHCGLICVLKVNTEV*TTSFAGFRRVIR- 25
T W T +++ VF + +ER + CG +CV + +V F GF+ +
Sbjct: 58 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 117
Query: 24 LPRVTTH 4
L RV H
Sbjct: 118 LDRVLRH 124
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = -3
Query: 186 TEWN---TLFLFNHVF--EVTNSTTERHLSDCHCGLICVLKVNTEV*TTSFAGFRRVIR- 25
T W T +++ VF + +ER + CG +CV + +V F GF+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80
Query: 24 LPRVTTH 4
L RV H
Sbjct: 81 LDRVLRH 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,144
Number of Sequences: 27780
Number of extensions: 284854
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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