Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30164
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 118 7e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 118 7e-28
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.7
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 8.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 118 bits (285), Expect = 7e-28
Identities = 50/76 (65%), Positives = 61/76 (80%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 213 TCQVAYSRIEGDHICA 260
TCQ+ SR+ GD++ A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 88.6 bits (210), Expect = 8e-19
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1
Query: 511 GAMKGAVDGGLNVPHSIKRFPGYDAESRKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 690
GAMKGA DGGL +PHS RFPG+D E+ + + E R +I+G HVAEYM L DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220
Query: 691 RQFSKYIKLGVTADAIE 741
+QFS I G+ +D +E
Sbjct: 221 KQFSGLIADGIESDQLE 237
Score = 59.3 bits (137), Expect = 6e-10
Identities = 31/83 (37%), Positives = 42/83 (50%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
L A+S ELPRYG+K GL N+ AAY+TG E
Sbjct: 75 LAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEA 134
Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
+++GP F+ +LDVGL RT+TG+
Sbjct: 135 IEDGPRPFKVFLDVGLKRTSTGS 157
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 118 bits (285), Expect = 7e-28
Identities = 50/76 (65%), Positives = 61/76 (80%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 213 TCQVAYSRIEGDHICA 260
TCQ+ SR+ GD++ A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 88.6 bits (210), Expect = 8e-19
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +1
Query: 511 GAMKGAVDGGLNVPHSIKRFPGYDAESRKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 690
GAMKGA DGGL +PHS RFPG+D E+ + + E R +I+G HVAEYM L DDE+ ++
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQ 220
Query: 691 RQFSKYIKLGVTADAIE 741
+QFS I G+ +D +E
Sbjct: 221 KQFSGLIADGIESDQLE 237
Score = 59.3 bits (137), Expect = 6e-10
Identities = 31/83 (37%), Positives = 42/83 (50%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
L A+S ELPRYG+K GL N+ AAY+TG E
Sbjct: 75 LAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEA 134
Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
+++GP F+ +LDVGL RT+TG+
Sbjct: 135 IEDGPRPFKVFLDVGLKRTSTGS 157
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 362 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 270
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -3
Query: 320 QHNLSDQP-SHHNVATHV-NKQRTNMVTFNPR 231
QH LSDQP S +N ++V +++R+N V+ R
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 161 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 3
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 643 AEYMRSLEQDDEDSFKRQFSKYIK 714
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,666
Number of Sequences: 5004
Number of extensions: 63421
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -