Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30164
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             131   5e-31
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         101   6e-22
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      29   5.5  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   28   7.2  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   7.2  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   7.2  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   9.5  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  131 bits (317), Expect = 5e-31
 Identities = 58/77 (75%), Positives = 69/77 (89%)
 Frame = +1

Query: 511 GAMKGAVDGGLNVPHSIKRFPGYDAESRKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 690
           GA+KGAVDGGL +PHS+KRFPGYD+ES+ F+AEVHR HIFG HVAEYMRSL ++DE+S+K
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYK 252

Query: 691 RQFSKYIKLGVTADAIE 741
           RQFS YIK GV AD+IE
Sbjct: 253 RQFSAYIKNGVDADSIE 269



 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 46/83 (55%), Positives = 51/83 (61%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           L +AY+HELP +GVKVGLTNYAAAY TG                          EYNVE 
Sbjct: 107 LASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVES 166

Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
           VD  PGAFRC+LDVGLART+TGA
Sbjct: 167 VDGSPGAFRCFLDVGLARTSTGA 189



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 96  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 221
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  101 bits (242), Expect = 6e-22
 Identities = 48/83 (57%), Positives = 53/83 (63%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           +CAAY+HELPRYGVKVGLTNYAAAY TG                          EYNVE 
Sbjct: 12  ICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVES 71

Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
           +D  PGAFRC+LDVGLART+TGA
Sbjct: 72  IDGSPGAFRCFLDVGLARTSTGA 94



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 GAMKGAVDGGLNVPH 555
           GA+KGAVDGGL +PH
Sbjct: 98  GALKGAVDGGLEIPH 112


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 580 DAESRKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 714
           D+  ++ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 505 CLGAMKGAVDGGLNV-PHSIKRFPGYDAESRKFNAEVHRAH 624
           C   M G VD  L+  PH ++ FP  + ++R  ++  H  H
Sbjct: 284 CTTVMMGMVDDALSFCPHLVRHFPTLEDKTRDLSSFRHTKH 324


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
           ++ +  ++L  D ++     L   PS    A+ +NKQ T  V+F P  G LA   F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 119 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 12
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
           ++ +  ++L  D ++     L   PS    A+ +NKQ T  V+F P  G LA   F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 51  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 146
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 278 THVNKQRTNMVTFNPRVGHLACY---IFVGETHNQTIFRCVIFVLVLNNEAFTSIII-SF 111
           +HV K  TN+V+  PR    A Y   I+  E  N  +  C +   VL+ + +++ +I SF
Sbjct: 280 SHVFKVMTNVVSMRPRFDFTADYLVRIYRAECVNLRL-HCNLIKGVLDKQGYSAFLIASF 338

Query: 110 P 108
           P
Sbjct: 339 P 339


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 36   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 122
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,457,877
Number of Sequences: 59808
Number of extensions: 490265
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)