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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30163
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      124   4e-29
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          31   0.80 
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)                    30   1.1  
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)                    29   1.9  
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.9  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               29   3.2  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          29   3.2  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 28   4.3  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)                   28   5.7  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   5.7  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)                    28   5.7  
SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       27   9.9  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.9  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     27   9.9  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               27   9.9  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  124 bits (300), Expect = 4e-29
 Identities = 56/76 (73%), Positives = 64/76 (84%)
 Frame = +3

Query: 27  MTNSKGYRSGTRDLFACRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
           MTN+KGYR GTR +F+ +FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 207 TGRVYNVTAHALGVIV 254
           TGRVYNVT  ALGV+V
Sbjct: 483 TGRVYNVTKRALGVVV 498


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 338 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 487
           F+KR +  +R L+E   A   +NL ++PA P K    +   EKPV   P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319


>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 224 RDCSCSRCDCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERL 370
           RDC+CS+C      R R+   R+ I  +  K ++ R+ + +R  EN RL
Sbjct: 44  RDCTCSKCQLITE-RQRVTAARVAILRQQRKSAELREKY-QREMENVRL 90


>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
          Length = 305

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 401 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 493
           VN  +   PP A + ++  ++PVL  P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 284 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 400
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 388 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSANTLVTITPRA*AVTLYT 215
           S+ F +   I  D+LK  L +  +     TD++ +  +YN + +TL+    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 214 RPVFPWY 194
           RP  PW+
Sbjct: 287 RPRLPWF 293


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +2

Query: 161 WCSSKGYATQSIPWKDRSRVQRDCSCSRCDCHKRVRGRIIPKRINIRVEHVKHSKCRQDF 340
           WC ++ Y  ++     + R+ +D S  + + H+RV    +P   N+R+      +  QD 
Sbjct: 106 WCGARTYNKRASTLSTQPRLYQDSSKEQTEQHQRVGAEPVP-TTNVRLTLSTQPRLYQDP 164

Query: 341 LKRVKENER 367
            K   E  +
Sbjct: 165 SKEQTEQHQ 173


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 284 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 463
           K I +  EH + S C Q F +    N  + ++  + GKT  + +     K  HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/71 (21%), Positives = 35/71 (49%)
 Frame = +2

Query: 284  KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 463
            +++ +        K R + ++   + +RLL+++++  K   L++ P P  A  + +  E 
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593

Query: 464  PVLLAPIPYEF 496
            P+  A  P+ F
Sbjct: 1594 PIHQAASPFVF 1604


>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
          Length = 600

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 230 CSCSRCDCHKRVRGRIIPKRIN-IRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN 406
           C CS    H   RGR++P RI+ + V    H+  +++F   ++  +R++ E   +  T  
Sbjct: 14  CVCSWRIGHTAKRGRVLPDRIDLVFVLDDSHAIGQRNFQSALELTKRIVHEFSVSPSTTR 73

Query: 407 L 409
           +
Sbjct: 74  V 74


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 164 CSSKGYATQSIPWKDRSRVQRDCSCSRCDCHK 259
           C+S    +      D+S VQ+DCS  R DC +
Sbjct: 736 CNSSDIGSTPTILSDKSPVQQDCSSIRRDCSR 767


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 41  GLPQRHQGLVRLQVPHTWNYSALHVHESVQSWRHCRHQRQW 163
           G+   H G+ R     TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 41  GLPQRHQGLVRLQVPHTWNYSALHVHESVQSWRHCRHQRQW 163
           G+   + G++R     TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 41  GLPQRHQGLVRLQVPHTWNYSALHVHESVQSWRHCRHQRQW 163
           G+   H G+ R     TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 41  GLPQRHQGLVRLQVPHTWNYSALHVHESVQSWRHCRHQRQW 163
           G+   + G++R     TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_10986| Best HMM Match : WD40 (HMM E-Value=0.026)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 200 WKDRSRVQRDCSCSRCDCHKRVRG--RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLL 373
           WK++  ++ +     C   K  +   + +P + + ++  ++ SKC Q+ L   KEN RL+
Sbjct: 342 WKEQYIIRANWFSGHCHVQKLHQNEHKTLPHQ-SAKITCLRISKCSQNLLASAKENSRLV 400


>SB_5377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 84 GTCKRTSPWCRC 49
          G C RT+PWC C
Sbjct: 56 GKCSRTTPWCWC 67


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 306 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 440
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
 Frame = +2

Query: 170 SKGYATQSIPWKDRSRVQRDCSCSRCDCHKRVRGRIIPKRINIR----VEHVKH-SKCRQ 334
           + G   Q I W  R    RDC     + +KR+ G     R+  R    +E  KH S+ + 
Sbjct: 408 ANGEWIQEIAWGKRGMDTRDCMGQTGNGYKRLHGASHNTRVRTRNGPALEKPKHASRWQS 467

Query: 335 DFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 463
           D  +++K+   L    K    + +  R  +   + H V GT+K
Sbjct: 468 DHTRQMKKRLGLTVHNKGRILSTHGHRWFS---STHAVLGTKK 507


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 140  HC-RHQRQWCSSKGYATQSIPW--KDRSRVQRDCSCSRCDC 253
            HC RH ++   +   AT+ +PW  KD S   R C  + C C
Sbjct: 1275 HCQRHYQEKTRNWFLATRHVPWCRKDGSYDPRQCYKTDCFC 1315


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 11  NTRLEDDELQGLPQRHQGLVRLQVPHTWNYSALHVHESV--QSWRHC 145
           NTR E+ EL  L  R QGL ++     W    L +H +    S R+C
Sbjct: 472 NTRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 CSCSRCDCHKRVRGRIIPKRINIRVEHV 313
           CSC RC  H+ +     P R N+ V H+
Sbjct: 278 CSC-RCVLHRGLMSMCFPSRANVGVFHI 304


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 CSCSRCDCHKRVRGRIIPKRINIRVEHV 313
           CSC RC  H+ +     P R N+ V H+
Sbjct: 336 CSC-RCVLHRGLMSMCFPSRANVDVFHI 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,435
Number of Sequences: 59808
Number of extensions: 366282
Number of successful extensions: 1179
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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