Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30163
(544 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 107 6e-24
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 107 6e-24
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 105 2e-23
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 105 2e-23
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 33 0.093
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.0
At1g80630.1 68414.m09462 leucine-rich repeat family protein 29 2.7
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.5
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 3.5
At2g13150.1 68415.m01450 expressed protein contains a bZIP trans... 28 3.5
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 6.1
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.1
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 27 6.1
At3g45880.1 68416.m04965 hypothetical protein 27 6.1
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 6.1
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.1
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 27 8.1
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 107 bits (256), Expect = 6e-24
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MTNSKGYRSGTRDLFACRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R+ TRDLFA FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 356
TGR++NVT A+GV V + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 77.8 bits (183), Expect = 4e-15
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 107 bits (256), Expect = 6e-24
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MTNSKGYRSGTRDLFACRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R+ TRDLFA FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 356
TGR++NVT A+GV V + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 77.8 bits (183), Expect = 4e-15
Identities = 37/84 (44%), Positives = 55/84 (65%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 105 bits (252), Expect = 2e-23
Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MTNSKGYRSGTRDLFACRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R+ TRDLFA FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 356
TGR++NVT A+GV V + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 78.6 bits (185), Expect = 3e-15
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 105 bits (252), Expect = 2e-23
Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MTNSKGYRSGTRDLFACRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 206
M G R+ TRDLFA FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 207 TGRVYNVTAHALGVIVTSVFAEGLYRS-ASISVLSMSSTPSADKTSLRESK 356
TGR++NVT A+GV V + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 78.6 bits (185), Expect = 3e-15
Identities = 37/84 (44%), Positives = 56/84 (66%)
Frame = +2
Query: 248 DCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 427
+ +K++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 428 PKAAHIVSGTEKPVLLAPIPYEFV 499
PK +V G + PIPY+ V
Sbjct: 135 PKPGFMVEGMTLET-VTPIPYDVV 157
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 33.5 bits (73), Expect = 0.093
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 177 GMPHKVYHGKTGRVYNVTAHALGVIVTSVFAEGLYRSASISVLSMSSTPSADKTSLRESK 356
G P K Y+G GR+ AHAL + + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 357 RMRGY 371
GY
Sbjct: 240 GKNGY 244
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 152 DVYNVSNFVHFHVRGERNSSM 90
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At1g80630.1 68414.m09462 leucine-rich repeat family protein
Length = 578
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 2 KLCNTRLEDDELQGLPQRHQGLVRLQVPHTWNYSALHVHESVQS 133
+ C T ++D+ L + ++ +GL+ L + N S+ V E VQS
Sbjct: 453 RACGTWIDDEALDMISKKCRGLLHLDLQGCLNVSSRGVKEVVQS 496
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 191 FVWHTLLNCTIASDVYNVSNFVHFHVRGERN 99
FVW LLN SDV+ V +H R ERN
Sbjct: 369 FVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 287 RINIRVEHVKHSKCRQDFLKRVKENERL 370
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g13150.1 68415.m01450 expressed protein contains a bZIP
transcription factor basic domain signature (PDOC00036)
Length = 262
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 306 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRNPS 470
S +STPS ++ + S P L PS+ R + +PL P++SVE R+ S
Sbjct: 4 SDNSTPSRPRSITQPSLAFSSL---PPLSPSPSSSRRNSIPLMNPSASVESRDSS 55
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 86 HTWNYSALHVHESVQSWRHCRHQRQWCS 169
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 293 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 406
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 224 RDCSCSRCDCHKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 403
R CSC+ CD +KR R ++ +R ++E K R+ L+++ + L ++A +
Sbjct: 585 RCCSCAVCDTNKRRRRSLLLRREKKQME--KEDNARK-LLEQLNSDNGL---HQSANNSE 638
Query: 404 NLKRQPAPPK 433
N +R +P K
Sbjct: 639 NHERHASPLK 648
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 421 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTL 257
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 6.1
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 203 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 27
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 26 L 24
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 131 SWRHCRHQRQWCSS 172
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 126 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 245
Y+ G V + +G + G PHKV R+Y++ + ALG
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALG 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,225
Number of Sequences: 28952
Number of extensions: 237842
Number of successful extensions: 796
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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