Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:...    40   0.088
UniRef50_Q6C679 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    36   1.4  
UniRef50_Q6C8A7 Cluster: Similarities with tr|Q00658 Emericella ...    35   2.5  

>UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 173

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +2

Query: 512 AIEWTMSTSARDGCLYRNAIN 574
           AIEWTMSTSARDGCLYRN  N
Sbjct: 1   AIEWTMSTSARDGCLYRNDFN 21


>UniRef50_Q9BPP9 Cluster: Gag-like protein; n=2; Bombyx mori|Rep:
           Gag-like protein - Bombyx mori (Silk moth)
          Length = 553

 Score = 39.5 bits (88), Expect = 0.088
 Identities = 16/24 (66%), Positives = 21/24 (87%)
 Frame = -3

Query: 153 VFAEFLRLRHPQLASEFLAFKANH 82
           +FAEFLRLR+P L++EFL FK +H
Sbjct: 7   LFAEFLRLRYPTLSAEFLEFKTHH 30


>UniRef50_Q6C679 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 303

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 638 GDKTKWRMDGEVMTIHTPVKYHL*HSDRGTRHVRTCSSSTRSPVFVRPAFVSPAIVRAAC 459
           G  T+   D +   + +P + H  H  RG  H   CS   +  V VRP      ++   C
Sbjct: 70  GSDTETESDNDAEPLLSPSQPHNVHKYRGVLHCGVCSKVVKHGVQVRPLPCKDHVIHTEC 129

Query: 458 VCGTS 444
           V G +
Sbjct: 130 VTGNN 134


>UniRef50_Q6C8A7 Cluster: Similarities with tr|Q00658 Emericella
           nidulans FlbD; n=1; Yarrowia lipolytica|Rep:
           Similarities with tr|Q00658 Emericella nidulans FlbD -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 478

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = -2

Query: 220 RRKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLGVFGLQG 89
           RR+A++   + RPTW    HG    G PP  PP A  GV G+ G
Sbjct: 105 RRRATLAAHQRRPTWDFGAHGGGPGGPPP--PPPATHGVPGMHG 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,343,370
Number of Sequences: 1657284
Number of extensions: 13205708
Number of successful extensions: 38841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38792
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)