Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    28   1.7  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.7  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.9  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +1

Query: 547 RVPLSECYKWYFTGV*IVMTSPSIRHLVLSPIRISKELTTF------HHDLCI*VTCKIP 708
           R+ LS  Y++   GV I++   S    +L    + K ++T       H+DLCI V C + 
Sbjct: 113 RLLLSTHYEYVDLGVSILLAFCS-EEAILRSYEVKKRVSTLLQCCLKHYDLCIPVICTLS 171

Query: 709 KN-RLSQYL 732
            N + ++YL
Sbjct: 172 SNPKSAKYL 180


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -2

Query: 280 NRAXLPPVLIEPLRSEKLGPRRKASVFKTRGRPTWVLSDHGRCIRG---IPPTSPPXARL 110
           N+     + IEPL  E +    KA +F    +    L +    +RG   +PP   P  ++
Sbjct: 92  NKLLNSSLFIEPLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRGEAILPPCKTPLGKV 151

Query: 109 G 107
           G
Sbjct: 152 G 152


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 225 PNFSDLSGSINTGGNXARLLQDKEKAQQNRNYEK 326
           PNFS+ +   NT    A   +  EK Q+N++ ++
Sbjct: 92  PNFSNFNKQGNTMNREANFQRTNEKIQRNKSIKR 125


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 733 LNIGLSDFLVSYMLLKYIDRGE 668
           ++ GLS +++SY + KY+D+ +
Sbjct: 147 VSFGLSAYVISYYVEKYVDKAK 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,141
Number of Sequences: 5004
Number of extensions: 50012
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)