Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    30   2.3  
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    29   4.0  
04_03_1015 - 21734381-21736534                                         29   5.3  
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730...    28   7.0  
06_01_0802 - 6018454-6018525,6018632-6018703,6018792-6018896,602...    28   7.0  
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291           28   9.3  
03_06_0240 + 32584589-32585092                                         28   9.3  
03_01_0445 - 3434529-3434795                                           28   9.3  

>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 169  SDHGRCIRGIPPTSPPXARLGVFGLQGQSHCEP 71
            SD   C R   P  PP  +  V GLQ   HC P
Sbjct: 1830 SDEVACDRCKNPQPPPDLKCAVCGLQMHRHCSP 1862


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +3

Query: 192  RVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEK 299
            R+L+ +  R+G NF DLSG I    N ARL   KE+
Sbjct: 1241 RILQ-IPKRKGANFRDLSGVIVGPDNVARLDPTKER 1275


>04_03_1015 - 21734381-21736534
          Length = 717

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 222 LAARRVFSRPGAAPPGYSA--IMDAVFAEFLRL--RHPQLAS 109
           +AA R+F+   A PP YS+  +  AV+A  LRL   H  LA+
Sbjct: 21  VAAGRLFAALDALPPSYSSSQVPSAVYASLLRLATSHRSLAA 62


>12_02_1099 -
           26072301-26072468,26072642-26072751,26072966-26073014,
           26073081-26073495,26073604-26074019
          Length = 385

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = -2

Query: 163 HGRCIRGIPPTSPPXARLGVFGLQGQSHCEPSRGLRRAR 47
           HGR   G+PP   P + LGV    G+   EPSRG  RAR
Sbjct: 76  HGRG-SGLPPIRAPRS-LGVRA--GRGGAEPSRGAPRAR 110


>06_01_0802 -
           6018454-6018525,6018632-6018703,6018792-6018896,
           6020263-6020546,6020655-6020793
          Length = 223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 130 SPPXARLGVFGLQGQSHCEPSRGLRRARCS 41
           SPP A   V  L+ +  C P+RGL R RC+
Sbjct: 26  SPPYAAAAVPALRSR-RCLPTRGLLRLRCA 54


>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
          Length = 152

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = -2

Query: 217 RKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLGVFGLQGQSHCEPSRGLRRARCSC 38
           +K  + +    P+ V S  GR IR +     P     V   +G    +  +GL+ +RCS 
Sbjct: 11  QKLELHQAVATPSDVSSVTGRIIRDLSMMVIPIEHHMVH--RGHGIFDFQQGLKISRCSA 68

Query: 37  VACTCVQSFC 8
             C CV   C
Sbjct: 69  QPCNCVGRCC 78


>03_06_0240 + 32584589-32585092
          Length = 167

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -1

Query: 593 HTPVKYHL*HSDRGTRHVRTCSSSTRSPVFVRPAFVSPAIVR--AACVCGTSAD*VL 429
           HTP   H    +  T   R       +P  + PA+ +PA+V   AA  CG   D +L
Sbjct: 60  HTPKVVHARPQEFMTVVQRLTGKPPAAPPVMMPAYDAPAMVEQGAAAACGAGGDPLL 116


>03_01_0445 - 3434529-3434795
          Length = 88

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 242 QVREVGASPQG--ECFQDPGPPHLGTQRSWT 156
           QV + G SP G  +C Q P P   G+ + WT
Sbjct: 57  QVLDNGGSPPGGNDCHQGPNPGGSGSGKCWT 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,618,069
Number of Sequences: 37544
Number of extensions: 383487
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)