BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30162 (758 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036 SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 31 1.3 SB_21960| Best HMM Match : rve (HMM E-Value=4e-23) 29 3.1 SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) 29 3.1 SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3) 29 5.4 SB_6231| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.19) 29 5.4 SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_38380| Best HMM Match : PIR (HMM E-Value=0.56) 29 5.4 SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 29 5.4 SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 29 5.4 SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 5.4 SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 28 7.2 SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_51403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 >SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1010 Score = 35.9 bits (79), Expect = 0.036 Identities = 25/72 (34%), Positives = 35/72 (48%) Frame = -2 Query: 262 PVLIEPLRSEKLGPRRKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLGVFGLQGQS 83 P+ ++P+ S ++ PRR S KT+ R V SDHG + G P P L GL S Sbjct: 421 PIALKPVVSSQVAPRRLESCIKTK-RVCAVASDHG--MPGRPTQISPLVALKQNGL--NS 475 Query: 82 HCEPSRGLRRAR 47 +C +G R Sbjct: 476 YCAADQGSAHTR 487 >SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) Length = 1740 Score = 30.7 bits (66), Expect = 1.3 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F DLS S N GG R E+ + Sbjct: 359 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVDLSMSENKGGGDKR----PEQGGK 406 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 407 GKNYQKQ 413 >SB_21960| Best HMM Match : rve (HMM E-Value=4e-23) Length = 1109 Score = 29.5 bits (63), Expect = 3.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +2 Query: 494 PGEQRRAIEWTMSTSARDGCLYRNAINGTLQACESS 601 P Q +W+ S S D C YR + + +CE+S Sbjct: 1054 PAVQGTRTKWSRSISRHDNCTYRTSSHTIRTSCEAS 1089 >SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) Length = 1213 Score = 29.5 bits (63), Expect = 3.1 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +2 Query: 494 PGEQRRAIEWTMSTSARDGCLYRNAINGTLQACESS 601 P Q +W+ S S D C YR + + +CE+S Sbjct: 1158 PAVQGTRTKWSRSISRHDNCTYRTSSHTIRTSCEAS 1193 >SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1268 Score = 29.1 bits (62), Expect = 4.1 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +2 Query: 443 QMYHKHRPREQWPG*QKPGEQRR-AIEWTMSTSARDGCLY 559 QM+ +H +Q G Q PG+Q++ AIE+ + + D L+ Sbjct: 1205 QMFQQHMQHQQVRGGQAPGQQQQTAIEYYLGRTTPDKALW 1244 >SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3) Length = 123 Score = 28.7 bits (61), Expect = 5.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 644 LIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTRHVRTCS 528 L G++TKW + +H ++ + SDR TR +R C+ Sbjct: 9 LFGNETKWPANLSARALHFSMRTY---SDRSTRQLRKCT 44 >SB_6231| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.19) Length = 338 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 232 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 279 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 280 GKNYQKQ 286 >SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1834 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 431 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 478 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 479 GKNYQKQ 485 >SB_38380| Best HMM Match : PIR (HMM E-Value=0.56) Length = 339 Score = 28.7 bits (61), Expect = 5.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 644 LIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTRHVRTCS 528 L G++TKW + +H ++ + SDR TR +R C+ Sbjct: 9 LFGNETKWPANLSARALHFSMRTY---SDRSTRQLRKCT 44 >SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01) Length = 471 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 195 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 242 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 243 GKNYQKQ 249 >SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) Length = 637 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 264 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 311 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 312 GKNYQKQ 318 >SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) Length = 1244 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 153 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 200 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 201 GKNYQKQ 207 >SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1515 Score = 28.7 bits (61), Expect = 5.4 Identities = 23/67 (34%), Positives = 33/67 (49%) Frame = +3 Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308 E GGIP+I L+ V R A++ P F +LS S N GG R E+ + Sbjct: 431 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 478 Query: 309 NRNYEKK 329 +NY+K+ Sbjct: 479 GKNYQKQ 485 >SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 919 Score = 28.3 bits (60), Expect = 7.2 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 235 EKLGPRRKASVFKTRGRPTWVLSD-HGRCIR 146 E++GPR K+S+ + P+ ++SD G C+R Sbjct: 467 EQVGPRNKSSITRVASFPSSLISDIFGGCLR 497 >SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) Length = 1037 Score = 28.3 bits (60), Expect = 7.2 Identities = 15/56 (26%), Positives = 24/56 (42%) Frame = +3 Query: 108 PRRAXGGEVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXA 275 PR A GGE+GG+ P S S + + + +S + + GG+ A Sbjct: 947 PRAAWGGEIGGVKMTSPPQSASVDHAAASITRIRSGISNETYSSTTIDLRGGGHSA 1002 >SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 519 Score = 28.3 bits (60), Expect = 7.2 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = -2 Query: 256 LIEPLRSEKLGPR---RKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLG 107 LIE LR +K P R A + K +G + L +G C G PT A+ G Sbjct: 185 LIEWLRWDKYVPEFACRCAKLAKAKGYSYFALQFYGECWSGPTPTGKEYAKYG 237 >SB_51403| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 312 Score = 27.9 bits (59), Expect = 9.5 Identities = 17/62 (27%), Positives = 24/62 (38%) Frame = -1 Query: 725 WLKRFFGILHVT*IHRSW*KVVSSLLILIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTR 546 W G LH+ + SW L ++G T W T+H Y L + GT Sbjct: 207 WDTTHHGTLHIMGHYTSWDTTHHGTLHIMGHYTSWDTTHHA-TLHIMGHYTLWDTTHGTL 265 Query: 545 HV 540 H+ Sbjct: 266 HI 267 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,519,950 Number of Sequences: 59808 Number of extensions: 443716 Number of successful extensions: 1421 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1260 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1415 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2070332524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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