Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)         31   1.3  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     29   3.1  
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)                    29   3.1  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)                   29   5.4  
SB_6231| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.19)           29   5.4  
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)                      29   5.4  
SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01)                  29   5.4  
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)                   29   5.4  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                29   5.4  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.4  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)               28   7.2  
SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_51403| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = -2

Query: 262 PVLIEPLRSEKLGPRRKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLGVFGLQGQS 83
           P+ ++P+ S ++ PRR  S  KT+ R   V SDHG  + G P    P   L   GL   S
Sbjct: 421 PIALKPVVSSQVAPRRLESCIKTK-RVCAVASDHG--MPGRPTQISPLVALKQNGL--NS 475

Query: 82  HCEPSRGLRRAR 47
           +C   +G    R
Sbjct: 476 YCAADQGSAHTR 487


>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
          Length = 1740

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/67 (35%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F DLS S N GG   R     E+  +
Sbjct: 359 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVDLSMSENKGGGDKR----PEQGGK 406

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 407 GKNYQKQ 413


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 494  PGEQRRAIEWTMSTSARDGCLYRNAINGTLQACESS 601
            P  Q    +W+ S S  D C YR + +    +CE+S
Sbjct: 1054 PAVQGTRTKWSRSISRHDNCTYRTSSHTIRTSCEAS 1089


>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
          Length = 1213

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 494  PGEQRRAIEWTMSTSARDGCLYRNAINGTLQACESS 601
            P  Q    +W+ S S  D C YR + +    +CE+S
Sbjct: 1158 PAVQGTRTKWSRSISRHDNCTYRTSSHTIRTSCEAS 1193


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 443  QMYHKHRPREQWPG*QKPGEQRR-AIEWTMSTSARDGCLY 559
            QM+ +H   +Q  G Q PG+Q++ AIE+ +  +  D  L+
Sbjct: 1205 QMFQQHMQHQQVRGGQAPGQQQQTAIEYYLGRTTPDKALW 1244


>SB_42232| Best HMM Match : zf-C2HC (HMM E-Value=8.3)
          Length = 123

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 644 LIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTRHVRTCS 528
           L G++TKW  +     +H  ++ +   SDR TR +R C+
Sbjct: 9   LFGNETKWPANLSARALHFSMRTY---SDRSTRQLRKCT 44


>SB_6231| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.19)
          Length = 338

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 232 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 279

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 280 GKNYQKQ 286


>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1834

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 431 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 478

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 479 GKNYQKQ 485


>SB_38380| Best HMM Match : PIR (HMM E-Value=0.56)
          Length = 339

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 644 LIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTRHVRTCS 528
           L G++TKW  +     +H  ++ +   SDR TR +R C+
Sbjct: 9   LFGNETKWPANLSARALHFSMRTY---SDRSTRQLRKCT 44


>SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
          Length = 471

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 195 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 242

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 243 GKNYQKQ 249


>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
          Length = 637

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 264 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 311

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 312 GKNYQKQ 318


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 153 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 200

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 201 GKNYQKQ 207


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +3

Query: 129 EVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXARLLQDKEKAQQ 308
           E GGIP+I     L+  V R       A++  P F +LS S N GG   R     E+  +
Sbjct: 431 EKGGIPKIS---DLADYVKRQA-----AIKNDPGFVNLSMSENKGGGDKR----PEQGGK 478

Query: 309 NRNYEKK 329
            +NY+K+
Sbjct: 479 GKNYQKQ 485


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 235 EKLGPRRKASVFKTRGRPTWVLSD-HGRCIR 146
           E++GPR K+S+ +    P+ ++SD  G C+R
Sbjct: 467 EQVGPRNKSSITRVASFPSSLISDIFGGCLR 497


>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
          Length = 1037

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 108  PRRAXGGEVGGIPRIQRP*SLSTQVGRPRVLKTLALRRGPNFSDLSGSINTGGNXA 275
            PR A GGE+GG+     P S S       + +  +      +S  +  +  GG+ A
Sbjct: 947  PRAAWGGEIGGVKMTSPPQSASVDHAAASITRIRSGISNETYSSTTIDLRGGGHSA 1002


>SB_1610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -2

Query: 256 LIEPLRSEKLGPR---RKASVFKTRGRPTWVLSDHGRCIRGIPPTSPPXARLG 107
           LIE LR +K  P    R A + K +G   + L  +G C  G  PT    A+ G
Sbjct: 185 LIEWLRWDKYVPEFACRCAKLAKAKGYSYFALQFYGECWSGPTPTGKEYAKYG 237


>SB_51403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = -1

Query: 725 WLKRFFGILHVT*IHRSW*KVVSSLLILIGDKTKWRMDGEVMTIHTPVKYHL*HSDRGTR 546
           W     G LH+   + SW       L ++G  T W       T+H    Y L  +  GT 
Sbjct: 207 WDTTHHGTLHIMGHYTSWDTTHHGTLHIMGHYTSWDTTHHA-TLHIMGHYTLWDTTHGTL 265

Query: 545 HV 540
           H+
Sbjct: 266 HI 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,519,950
Number of Sequences: 59808
Number of extensions: 443716
Number of successful extensions: 1421
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)