Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    32   0.38 
U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AL132898-18|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +2

Query: 281 TTGQRKSTTKQKLRKETKQINTCRKPL-CRQMYHEHXXXXXXXXXXXLPERALSRQMYHK 457
           TT + + T+  +  K+T     CRK L  ++ Y EH             +  L R     
Sbjct: 44  TTQKFRQTSNGRTMKQTWTCGVCRKELSSKRSYTEHMNIHNKSRPFQSSQMTLHRHKLRN 103

Query: 458 HRPREQW 478
           H P+ +W
Sbjct: 104 HTPKAEW 110


>U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical
           protein T09D3.8 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 497 GEQRRAIEWTMSTSARDGCLYRNAINGTLQACESS*LH 610
           G ++R  EW  + S  DGC+  N    T   C S+ L+
Sbjct: 79  GMKKRPNEWLQTDSTSDGCVQWNVYCNTSPDCTSTILY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,562
Number of Sequences: 27780
Number of extensions: 311008
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)