Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30162
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   7.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.2  

>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 480 GHCSRGLCLWYICR 439
           GHC +G+C   ICR
Sbjct: 72  GHCEKGVC---ICR 82


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 480 GHCSRGLCLWYICR 439
           GHC +G+C   ICR
Sbjct: 47  GHCEKGVC---ICR 57


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 582 YRRVNRHDFTIHSPFSFITDKNQQGAHYFSP 674
           Y+ + R D   H P + +TD       Y SP
Sbjct: 416 YKNI-REDDARHIPHASVTDSENTVPRYLSP 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,323
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)