Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30161
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   117   2e-27
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   111   8e-26
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...   109   4e-25
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    91   2e-19
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    85   1e-17
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    78   1e-15
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    61   2e-10
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    45   1e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    31   0.14 
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.9  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  117 bits (282), Expect = 2e-27
 Identities = 59/98 (60%), Positives = 66/98 (67%)
 Frame = +1

Query: 472 T*DN*ELLSTSSEPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFK 651
           T +N   L+T  +  G GY+GS FHRVI NFMIQ            +SIYG RF DENFK
Sbjct: 55  TAENFRALATGEK--GFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFK 112

Query: 652 LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHL 765
           L H   G LSMANAG D+NGSQFFITTVKTPWLDG H+
Sbjct: 113 LSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHV 150



 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 30/54 (55%), Positives = 39/54 (72%)
 Frame = +2

Query: 377 KGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLRGRGTKGA 538
           +GPKVT  V FD++ GD+ +G + IGLFGKTVPKT ENF  LA   +G G +G+
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGS 74


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  111 bits (268), Expect = 8e-26
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +1

Query: 514 EGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 693
           +G GY GS FHRVI  FM+Q            +SIYGE+F DENF LKH   G LSMANA
Sbjct: 42  KGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANA 101

Query: 694 GKDTNGSQFFITTVKTPWLDGRHL 765
           G +TNGSQFFITTV TPWLDG+H+
Sbjct: 102 GPNTNGSQFFITTVVTPWLDGKHV 125



 Score = 33.1 bits (72), Expect = 0.046
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 407 FDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLRGRGTKGAS 541
           FD+      +G IV  LF   VPKT  NF  L    +G G  G++
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGST 50


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score =  109 bits (262), Expect = 4e-25
 Identities = 52/80 (65%), Positives = 59/80 (73%)
 Frame = +1

Query: 526 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDT 705
           YKGS+FHRVIKNFM+Q             SIYGE+FEDENF+LKH     LSMANAG +T
Sbjct: 51  YKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNT 110

Query: 706 NGSQFFITTVKTPWLDGRHL 765
           NGSQFFITTV TP LDG+H+
Sbjct: 111 NGSQFFITTVPTPHLDGKHV 130



 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 398 KVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLRGRG 526
           K+S D KI      TI   LF   VPKT +NF  L       G
Sbjct: 8   KISIDGKIQP----TIYFELFDNVVPKTVKNFASLCNGFEKDG 46


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 48/94 (51%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +1

Query: 487 ELLSTSSEPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGER-FEDENFKLKHY 663
           E L  + +P G  YK S FHR+I+ FMIQ             +I+  R F DENF LKH 
Sbjct: 44  ETLGVNQKPIG--YKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHD 101

Query: 664 GAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHL 765
             G LSMANAGKD+NG QFFITTV   +LDG+H+
Sbjct: 102 RPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHV 135



 Score = 30.3 bits (65), Expect = 0.32
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 401 VSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQ 499
           V  D+ I    +G I I LF   VPKT ENF Q
Sbjct: 7   VFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQ 39


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
 Frame = +1

Query: 526 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE-NFKLKHYGAGWLSMANAGKD 702
           Y G  FHRVI +F+IQ             SIYG++F+DE +  L H GAG LSMANAG +
Sbjct: 38  YDGVIFHRVIPDFVIQGGDPTGTGRGGT-SIYGDKFDDEIHSDLHHTGAGILSMANAGPN 96

Query: 703 TNGSQFFITTVKTPWLDGRH 762
           TN SQFFIT   TPWLDG+H
Sbjct: 97  TNSSQFFITLAPTPWLDGKH 116



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 431 NIGTIVIGLFGKTVPKTTENFFQLAQ 508
           ++G I+I L+ +  PKT +NF+ LA+
Sbjct: 9   SLGKILIELYTEHAPKTCQNFYTLAK 34


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +1

Query: 502 SSEPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE-NFKLKHYGAGWL 678
           ++  E   Y  + FHR+IKNFMIQ             SI+ + FEDE +  LKH     +
Sbjct: 483 TTHAENGYYDNTIFHRIIKNFMIQGGDPLGDGTGG-ESIWKKDFEDEISPNLKHDRPFTV 541

Query: 679 SMANAGKDTNGSQFFITTVKTPWLDGRH 762
           SMAN+G +TNGSQFFITT  TPWLDG+H
Sbjct: 542 SMANSGPNTNGSQFFITTDLTPWLDGKH 569


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +1

Query: 526 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFK-LKHYGAGWLSMANAGKD 702
           Y+ + FHR I  FMIQ            +SI+G+ F+DE    LKH   G +SMAN GK+
Sbjct: 312 YRNTIFHRNIARFMIQGGDPSGTGRGG-QSIWGKPFKDEFCNPLKHDDRGIISMANRGKN 370

Query: 703 TNGSQFFITTVKTPWLDGRH 762
           TNGSQFFI       LD +H
Sbjct: 371 TNGSQFFILYGPAKHLDNKH 390


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 526 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENF-KLKHYGAGWLSMANAGKD 702
           Y G+  HRV+  F+IQ             SIYGE F  E   +L+    G + MA    +
Sbjct: 49  YDGTIVHRVVPEFLIQGGDPTGTGMGG-ESIYGEPFAVETHPRLRFIRRGLVGMACTENE 107

Query: 703 TNGSQFFITTVKTPWLDGR 759
            N SQFFIT   TP  +G+
Sbjct: 108 GNNSQFFITLGPTPEWNGK 126


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 425 DDNIGTIVIGLFGKTVPKTTENFFQLAQ 508
           +  +G +VI LF K  PKT ENF +L +
Sbjct: 6   ETTVGDLVIDLFVKEAPKTCENFLKLCK 33


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 516 LRF*AS*KKFSVVLGTVFPNN 454
           LRF A  +KFSV++   FPNN
Sbjct: 218 LRFAAKKRKFSVIVAEGFPNN 238


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 423  PIFMSKLTL*VTLG-PLGISSDLALAMNNKIPKAIVRVPMIKTSLVRFL 280
            PIF  KL + +TLG  L ISS     +   + KA V   ++ TS + FL
Sbjct: 3530 PIFQGKLDMAITLGHKLSISSAKLSTICRSVLKASVNSALL-TSWICFL 3577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,716
Number of Sequences: 5004
Number of extensions: 61243
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)