Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30161
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 135 3e-32
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 112 3e-25
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 7e-24
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 64 1e-10
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 62 6e-10
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 57 1e-08
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 53 2e-07
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 49 5e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 28 7.3
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 28 9.7
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 135 bits (327), Expect = 3e-32
Identities = 61/89 (68%), Positives = 69/89 (77%)
Frame = +1
Query: 499 TSSEPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWL 678
T +G GYK S FHRVI++FMIQ +SIYG++F DENFKL+HYGAGWL
Sbjct: 80 TIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWL 139
Query: 679 SMANAGKDTNGSQFFITTVKTPWLDGRHL 765
SMANAGKDTNGSQFFITTVKTPWLDGRH+
Sbjct: 140 SMANAGKDTNGSQFFITTVKTPWLDGRHV 168
Score = 34.7 bits (76), Expect = 0.084
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 338 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLF 460
L F+AS+ + K P VT KV FD+ IG + G I IGLF
Sbjct: 12 LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLF 48
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 122 bits (295), Expect = 2e-28
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = +1
Query: 493 LSTSSEPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAG 672
++ + + +G GYK S FHRVIKNFMIQ SIYG+ F+DENF LKHYG G
Sbjct: 59 VALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPG 118
Query: 673 WLSMANAGKDTNGSQFFITTVKTPWLDGRH 762
WL MANAGK+TNGSQF+ITT+KT WLDG H
Sbjct: 119 WLCMANAGKNTNGSQFYITTIKTSWLDGSH 148
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/65 (41%), Positives = 35/65 (53%)
Frame = +2
Query: 338 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLR 517
L+F+A +D VT KV D+ IG G +++GLFG T PKT NF LA +
Sbjct: 8 LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66
Query: 518 GRGTK 532
G G K
Sbjct: 67 GFGYK 71
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 112 bits (269), Expect = 3e-25
Identities = 51/84 (60%), Positives = 60/84 (71%)
Frame = +1
Query: 514 EGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 693
+G GYKGS FHR+I FM Q +SIYG +FEDENF LKH GAG LSMAN+
Sbjct: 177 KGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANS 236
Query: 694 GKDTNGSQFFITTVKTPWLDGRHL 765
G +TNGSQFF+TT KT WLDG+H+
Sbjct: 237 GPNTNGSQFFLTTEKTDWLDGKHV 260
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +2
Query: 386 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLRGRGTKGAS 541
+V +V FD+ IG+ + G IV+ L VP T ENF L + +G G KG+S
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSS 185
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 107 bits (258), Expect = 7e-24
Identities = 50/84 (59%), Positives = 56/84 (66%)
Frame = +1
Query: 514 EGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 693
+G GYKGS FHRVI FM Q +SIYG +F DENF LKH G G LSMANA
Sbjct: 43 KGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANA 102
Query: 694 GKDTNGSQFFITTVKTPWLDGRHL 765
G TNGSQFF+ T KT WLDG+H+
Sbjct: 103 GPGTNGSQFFLCTAKTSWLDGKHV 126
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/53 (45%), Positives = 30/53 (56%)
Frame = +2
Query: 383 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQNLRGRGTKGAS 541
PK T+ FD++IG G IV+ L VPKT ENF L +G G KG+S
Sbjct: 2 PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSS 51
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +1
Query: 613 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 762
SI+G FEDE + L+H +SMANAG +TNGSQFFIT V TPWLD +H
Sbjct: 8 SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKH 58
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 61.7 bits (143), Expect = 6e-10
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +1
Query: 613 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHL 765
S+YG FEDE+F + H G + MAN G+ TNGSQF+IT PW+D +++
Sbjct: 51 SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYV 101
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = +1
Query: 682 MANAGKDTNGSQFFITTVKTPWLDGRHL 765
MANAGKDTNGSQFFITTVKT WLDG+H+
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHV 28
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/37 (70%), Positives = 30/37 (81%)
Frame = +1
Query: 655 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHL 765
+H G LSMAN+G +TNGSQFFITTV TP LDGRH+
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHV 224
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1
Query: 676 LSMANAGKDTNGSQFFITTVKTPWLDGRHL 765
LSMANAG TNGSQFF+ T KT WLDG+H+
Sbjct: 3 LSMANAGPGTNGSQFFLCTAKTSWLDGKHV 32
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 48.8 bits (111), Expect = 5e-06
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +1
Query: 613 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTV 735
SIYG F DE F+ KH LSMAN G +TNGSQFFI V
Sbjct: 31 SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 625 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRH 762
E +DE L H G +SMAN G ++NGSQFFI K P LD ++
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKY 335
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 526 YKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG-KD 702
Y G++FHRVI FM+Q + D H G L+MA +D
Sbjct: 60 YAGTQFHRVIPGFMVQGGGFDADMQQKDTQAPIKNEADNGL---HNVRGTLAMARTQVRD 116
Query: 703 TNGSQFFITTVKTPWLD 753
+ SQFFI +LD
Sbjct: 117 SATSQFFINHKDNAFLD 133
>SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 570 DHEIFNYSVELAPFVPLPLRF*AS*KKFSVVLGTVFPNNPITIVP 436
D N++ +L +PL +R KF L T+F NN IT +P
Sbjct: 339 DRSFSNFAAKLWNSLPLHIRNTDCLSKFKSSLKTIFENNLITSLP 383
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 437 GTIVIGLFGKTVPKTTENFFQLAQNLRGRG 526
G ++ LF VPKT ENF L +G G
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIG 31
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 431 NIGTIVIGLFGKTVPKTTENFFQL 502
++G I I L+GK PK NF QL
Sbjct: 11 SVGDIDIELWGKETPKACRNFIQL 34
>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 393 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 292
VTL PL +S+ ++N + A+VRV I SL
Sbjct: 38 VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,055,953
Number of Sequences: 59808
Number of extensions: 421667
Number of successful extensions: 677
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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