Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30160
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 136 3e-33
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 136 3e-33
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 4.2
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 5.5
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 5.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.5
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 5.5
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 5.5
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 5.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 5.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.3
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 7.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.3
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 25 9.7
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 136 bits (329), Expect = 3e-33
Identities = 64/85 (75%), Positives = 70/85 (82%)
Frame = +1
Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
ALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP
Sbjct: 64 ALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPN 123
Query: 436 GTVARVRIGQPIMSVRSSDRWKAQA 510
G VARV IGQ +MSVR+ D +A A
Sbjct: 124 GLVARVNIGQVLMSVRTKDSSRATA 148
Score = 119 bits (287), Expect = 3e-28
Identities = 50/62 (80%), Positives = 57/62 (91%)
Frame = +2
Query: 68 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 248 SS 253
+S
Sbjct: 61 TS 62
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 504 TGIEALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
T IEALRR ++KFPG+Q+I VSKKWGF++Y R E+ + R G + DG +
Sbjct: 147 TAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 136 bits (328), Expect = 3e-33
Identities = 64/85 (75%), Positives = 70/85 (82%)
Frame = +1
Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
ALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP
Sbjct: 64 ALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPN 123
Query: 436 GTVARVRIGQPIMSVRSSDRWKAQA 510
G VARV IGQ +MSVR+ D +A A
Sbjct: 124 GLVARVNIGQILMSVRTKDSSRATA 148
Score = 119 bits (287), Expect = 3e-28
Identities = 50/62 (80%), Positives = 57/62 (91%)
Frame = +2
Query: 68 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 248 SS 253
+S
Sbjct: 61 TS 62
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 504 TGIEALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
T IEALRR ++KFPG+Q+I VSKKWGF++Y R E+ + R G + DG +
Sbjct: 147 TAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 441 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 325
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 203 FPLCVHLVSDEYEQLSSGLWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIK 370
FP + +SD+Y++ S+ ++ +S ++ + S S +F S L A IK
Sbjct: 332 FPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIK 387
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 603 HNVHTL*NPTSLIRRSFDVRGT*TWHGAEPRCLCLPPVTRAHGHDGL 463
H+V L N + ++ + GT WH A L +P + + G +G+
Sbjct: 4 HDVEDLINQLDISEKAMLLSGTDLWHTAAIPRLNIPSIRLSDGPNGI 50
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 520 CAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 636
C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 31 CVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 635 EAALFTQLLKLITFILCETPLL*YVDLLTSGELE 534
+A F ++L FI C +P+L Y+ + G +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 125 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 235
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 502 AQASRLCAVPSSSSPDVKRSTYQRSGVS 585
A +S + P+S SPD+K YQ G++
Sbjct: 369 ANSSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 635 EAALFTQLLKLITFILCETPLL*YVDLLTSGELE 534
+A F ++L FI C +P+L Y+ + G +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 635 EAALFTQLLKLITFILCETPLL*YVDLLTSGELE 534
+A F ++L FI C +P+L Y+ + G +
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 269
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 635 EAALFTQLLKLITFILCETPLL*YVDLLTSGELE 534
+A F ++L FI C +P+L Y+ + G +
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFD 297
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 170 DLGKKRANVDDFPLCVHLVSDEYEQL 247
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 310 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 414
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 273 TSCLQSPELSCSYSSDTKCTHSGKSSTFA 187
TSC + SC S C +GKS+ A
Sbjct: 269 TSCCSQEKKSCCTSEKPSCCSNGKSTVCA 297
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 135 VGVYLIPRSVSSIWV 179
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 654 DASRHWRGGPLHAASQTHNVHTL*NP-TSLIRRSFDVRGT*TWH 526
D S + +HAA Q T+ + I+R FD + + TWH
Sbjct: 8 DMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWH 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,840
Number of Sequences: 5004
Number of extensions: 61678
Number of successful extensions: 220
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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