Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30160
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 138 5e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 136 2e-32
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 133 1e-31
01_01_0488 - 3597652-3598761,3599619-3600860 33 0.27
08_01_1053 - 10716970-10717474,10718259-10718323 31 1.1
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.7
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176... 28 5.7
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 28 7.6
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 28 7.6
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 28 7.6
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 138 bits (333), Expect = 5e-33
Identities = 61/79 (77%), Positives = 69/79 (87%)
Frame = +1
Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
ALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQ
Sbjct: 64 ALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123
Query: 436 GTVARVRIGQPIMSVRSSD 492
GT ARV IGQ ++SVR +
Sbjct: 124 GTCARVDIGQVLLSVRCKE 142
Score = 109 bits (263), Expect = 1e-24
Identities = 47/62 (75%), Positives = 53/62 (85%)
Frame = +2
Query: 68 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 248 SS 253
SS
Sbjct: 61 SS 62
Score = 74.1 bits (174), Expect = 9e-14
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +3
Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
EALRRAKFKFPGRQKI S+KWGFTK+ R E+ KL+ EGR+ +DG++
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVN 196
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 136 bits (328), Expect = 2e-32
Identities = 62/86 (72%), Positives = 70/86 (81%)
Frame = +1
Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
ALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQ
Sbjct: 60 ALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 119
Query: 436 GTVARVRIGQPIMSVRSSDRWKAQAS 513
GT ARV IGQ ++SVR AS
Sbjct: 120 GTCARVDIGQVLLSVRCKPNNAVHAS 145
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +2
Query: 89 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSS 253
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++S
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTS 58
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +3
Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
EALRRAKFKFPGRQKI S+KWGFTK+ R E+ +L+ EGR+ DG++
Sbjct: 146 EALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVN 192
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 133 bits (321), Expect = 1e-31
Identities = 61/85 (71%), Positives = 69/85 (81%)
Frame = +1
Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
ALEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP
Sbjct: 371 ALEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPT 430
Query: 436 GTVARVRIGQPIMSVRSSDRWKAQA 510
GT ARVRIGQ ++SVR D A A
Sbjct: 431 GTCARVRIGQVLLSVRCRDANAAHA 455
Score = 104 bits (249), Expect = 7e-23
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +2
Query: 80 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSS 253
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SS
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSS 369
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/47 (61%), Positives = 39/47 (82%)
Frame = +3
Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
EALRRAKFKFPGRQ++ S KWGFT+++R E+ KL+ EGR+ DG++
Sbjct: 457 EALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVN 503
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -1
Query: 372 HFIDADNVERVKSHADMELILSAVLYEVLIAADTSCLQSPELSCSYS 232
+F++A ++ ++ +EL L YE+L+ A + SPEL ++
Sbjct: 652 YFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFA 698
>08_01_1053 - 10716970-10717474,10718259-10718323
Length = 189
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 430 PQGTVARVR--IGQPIMSVRSSDRWKAQASRLCAVPSSSSPDVKRSTYQRSGVSQS 591
P GT+ ++ +GQPI A+ LC++ S + R YQ G++ S
Sbjct: 94 PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 470 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 378
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 424 GKPQGTVARVRIGQPIMSVRSSD 492
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>06_01_0230 +
1765913-1766251,1766365-1766445,1766553-1766651,
1766748-1766837,1766937-1767000,1767093-1767193,
1767284-1767393,1767515-1767758,1767852-1768052,
1768296-1768487,1768594-1768680,1768790-1768918,
1769276-1769392
Length = 617
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 314 SFPQFFTRYLLQQIRPASKALSSAVHIRRTPSARTVESRQRSLSSYPNRRYGS 156
S P R+ Q ++P S A A + T SAR +QRS+ +RR+ S
Sbjct: 22 SAPSSLLRHGFQGLKPRSPAGGDATSLSVTTSARATPKQQRSVQR-GSRRFPS 73
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 83 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVH-----LVSDEYEQL 247
A +RYC + + +S+F R P + DL K V + C H L+S + Q
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTHHRNQILISKQLLQE 465
Query: 248 SSGLW 262
+ +W
Sbjct: 466 GADIW 470
>05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 269 PASKALSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGS 90
PAS +SA + + + + + S S +RR +WD P ++ T FC
Sbjct: 1041 PASNIPASAFSMSAPAGSSSSSTTRASTPSSRSRRVTAWDM--PHELLLNTTTAFCDASL 1098
Query: 89 ISLA 78
++L+
Sbjct: 1099 VTLS 1102
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 221 LVSDEYEQLSSGLWRQDVSAAIS 289
LV D Y+ L LWR++VS AIS
Sbjct: 411 LVRDPYQLLERFLWRKNVSFAIS 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,605,191
Number of Sequences: 37544
Number of extensions: 458409
Number of successful extensions: 1409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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