Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30160
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 53 2e-07
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 1.1
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 30 1.9
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.9
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11) 29 3.4
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3) 29 4.4
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 29 4.4
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 7.7
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25) 28 7.7
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.7
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +1
Query: 409 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQA 510
MRGAFGKPQGTVARV IGQ I+S+R+ D KA A
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAA 34
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +3
Query: 498 EGTGIEALRRAKFKFPGRQK 557
+ IEALRRAKFKFPGRQK
Sbjct: 31 KAAAIEALRRAKFKFPGRQK 50
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 259 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 378
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 269 PASKALSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 138
PA A+ TP+ R E+RQR+ ++ RR S D ++P
Sbjct: 94 PAGTGARPAIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = -3
Query: 460 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 281
+C V Q P AC + S GA + Y C K V CG G T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594
Query: 280 S 278
S
Sbjct: 595 S 595
>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
Length = 813
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 355 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQASRLCAVPS 534
+++N +L+CAGAD ++ F + + + + + S + + S LC +
Sbjct: 429 LKVNLLLNCAGADAIEEYSHFVFNEGESNESYEDVCRKFKGTLSGSKETSSMSALCLIKE 488
Query: 535 SSSPDVKR---STYQRSGVSQSM 594
+ K ST ++ +SM
Sbjct: 489 TRKEGKKETPVSTVEQENQVESM 511
>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
Length = 615
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +3
Query: 306 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 386
+KGS+ +PH + S +P+YP +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 257 ALSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 114
ALS ++I P S SR +S P R + +HPD S SDT
Sbjct: 139 ALSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1104
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 541 SPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAC 651
S VKR++ QR GV + V++L + A P+T+C
Sbjct: 11 SLSVKRTSSQRKGVKLKLLVVALGLIREIATQPLTSC 47
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 417 CVWQASGYCSTCSHWTTHHV 476
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
Length = 1597
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -3
Query: 235 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 107
FVGH + ++V+N+ Q+ DT +G+ + P + +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 376 SCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQASRLCAVPSSSSPDVK 555
+C R+++ F K GT IG+ +RS D A+ SR+C S DV
Sbjct: 1716 ACHAGRRIESRCSEDFCKNGGTCRESPIGRSWRRIRSPDCGAARRSRVCISLSWRPYDVL 1775
Query: 556 R 558
R
Sbjct: 1776 R 1776
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,035,321
Number of Sequences: 59808
Number of extensions: 507702
Number of successful extensions: 3171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3170
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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