Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30160
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   134   7e-32
AF077530-4|AAC26267.1|  147|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   8.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   8.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   8.9  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  134 bits (323), Expect = 7e-32
 Identities = 60/76 (78%), Positives = 66/76 (86%)
 Frame = +1

Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
           ALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQ
Sbjct: 64  ALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQ 123

Query: 436 GTVARVRIGQPIMSVR 483
           G VARV IG  + S+R
Sbjct: 124 GLVARVDIGDILFSMR 139



 Score =  119 bits (287), Expect = 2e-27
 Identities = 52/62 (83%), Positives = 55/62 (88%)
 Frame = +2

Query: 68  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRANVD FP CVH++S+E E L
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60

Query: 248 SS 253
           SS
Sbjct: 61  SS 62



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/47 (65%), Positives = 40/47 (85%)
 Frame = +3

Query: 510 IEALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGL 650
           IEA RRAKFKFPGRQ I  S+KWGFTK++R ++E++R EGRL +DG+
Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGV 195


>AF077530-4|AAC26267.1|  147|Caenorhabditis elegans Hypothetical
           protein C40D2.4 protein.
          Length = 147

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 570 LIRRSFDVRGT*TWHGAEPRCLCLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPI 391
           +I+R F++R   T    EP  + LP        +  +N N C  TL   +  TH  ++ I
Sbjct: 43  IIQRWFEIRRAPTQESWEPEVI-LPEAIAIFEKEFTTNPNPCSHTLEELRMKTHVQVDSI 101

Query: 390 S 388
           +
Sbjct: 102 N 102


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 501 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 379
           +P VT A   + LSN  T  ST  LA   T  +L P+S  A
Sbjct: 46  VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 431 GLPNAPRIPVWSLSAPA 381
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 190 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 89
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 190 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 89
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 190 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 89
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,255
Number of Sequences: 27780
Number of extensions: 359365
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)