Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30160
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   133   9e-32
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   133   9e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   133   9e-32
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i...    29   3.6  
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati...    28   4.8  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   6.3  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    27   8.4  
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   8.4  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   8.4  
At1g07490.1 68414.m00802 expressed protein                             27   8.4  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  133 bits (322), Expect = 9e-32
 Identities = 60/79 (75%), Positives = 68/79 (86%)
 Frame = +1

Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
           ALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  
Sbjct: 64  ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123

Query: 436 GTVARVRIGQPIMSVRSSD 492
           GT ARV IGQ ++SVR  D
Sbjct: 124 GTCARVAIGQVLLSVRCKD 142



 Score =  109 bits (261), Expect = 2e-24
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 68  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 248 SS 253
           SS
Sbjct: 61  SS 62



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 32/47 (68%), Positives = 38/47 (80%)
 Frame = +3

Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
           EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR   R+  DG++
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVN 196


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  133 bits (322), Expect = 9e-32
 Identities = 60/79 (75%), Positives = 68/79 (86%)
 Frame = +1

Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
           ALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  
Sbjct: 64  ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123

Query: 436 GTVARVRIGQPIMSVRSSD 492
           GT ARV IGQ ++SVR  D
Sbjct: 124 GTCARVAIGQVLLSVRCKD 142



 Score =  108 bits (260), Expect = 3e-24
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 68  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 248 SS 253
           SS
Sbjct: 61  SS 62



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +3

Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
           EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+E R+  DG++
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVN 196


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  133 bits (322), Expect = 9e-32
 Identities = 60/79 (75%), Positives = 68/79 (86%)
 Frame = +1

Query: 256 ALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQ 435
           ALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  
Sbjct: 64  ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123

Query: 436 GTVARVRIGQPIMSVRSSD 492
           GT ARV IGQ ++SVR  D
Sbjct: 124 GTCARVAIGQVLLSVRCKD 142



 Score =  109 bits (261), Expect = 2e-24
 Identities = 47/62 (75%), Positives = 52/62 (83%)
 Frame = +2

Query: 68  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 247
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 248 SS 253
           SS
Sbjct: 61  SS 62



 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +3

Query: 513 EALRRAKFKFPGRQKIYVSKKWGFTKYERYEFEKLREEGRLANDGLH 653
           EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+E R+  DG++
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVN 196


>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
           isoleucine--tRNA ligase, putative similar to SP|P41252
           Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
           (Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
           contains Pfam profile PF00133: tRNA synthetases class I
           (I, L, M and V)
          Length = 1190

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 311 FPQFFTRYLLQQIRPASKALSSAVHIRRTPSARTVESRQRSLS 183
           F  FFT  L Q +R A K    +VH    P    +E  +  LS
Sbjct: 804 FTPFFTETLYQNLRKACKGSEESVHYCSIPPREGMEGERIELS 846


>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
           licensing factor Mcm7 (MCM7) identical to DNA
           replication licensing factor Mcm7 SP|P43299 PROLIFERA
           protein {Arabidopsis thaliana}; contains Pfam profile
           PF00493: MCM2/3/5 family
          Length = 716

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +3

Query: 588 KYERYEFEKLREE--GRLANDG 647
           KYE YEF+K  EE   RLA DG
Sbjct: 303 KYEEYEFQKDEEEQIARLAEDG 324


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 274 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 363
           + C K   K C +  F I    HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 253 RALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 381
           +A+  G  C  C+ +  K CG+    I+   HP H +++     C
Sbjct: 66  KAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 176 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 69
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 143 VPDPKIRIFDLGKKRANVDDFPL 211
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 508 ASRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTACI 654
           +S  C+VPSSSS  + RS+ ++   S +    SL    K     M  C+
Sbjct: 48  SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSLAKEQKGRFYIMRRCV 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,372
Number of Sequences: 28952
Number of extensions: 341284
Number of successful extensions: 1027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)