Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30159
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 103 2e-23
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.18
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 2.2
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.9
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 26 3.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 6.8
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 9.0
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.0
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.0
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 103 bits (247), Expect = 2e-23
Identities = 48/89 (53%), Positives = 65/89 (73%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR
Sbjct: 85 KKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRT 142
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 507
R DG + IKV LD T+++K+ +F
Sbjct: 143 RQATDGRKTIKVFLDNRDANTVDYKLGSF 171
Score = 77.8 bits (183), Expect = 1e-15
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 184
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 185 MPKLKAFQKIQIRLVRELEKKFS 253
P LKAF K Q RL RELEKKF+
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFA 88
Score = 33.5 bits (73), Expect = 0.026
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +3
Query: 498 GHLPSVYKKLTGREVTFEFP 557
G SVY KLTG+ VTFEFP
Sbjct: 169 GSFSSVYHKLTGKNVTFEFP 188
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.18
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 259 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 438
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 439 SQLIKVHLD-KNQQTTIEHKV 498
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 346 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 507
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 330 KEATLKDIDLCVRCYPRGLGLPC 398
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 509 RKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMR 414
R V L +C FL K T SC NL L++
Sbjct: 197 RSVDLLFGGGLCSFLPKSTYRSCRSDNLDLLK 228
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 173 IYVPMPKLKAFQKIQIRLVRELEKKFSVNM 262
+++P K F+KI+ +VRE E+K N+
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEKTGKNV 130
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 348 P*AWPLLFVSNTSFVAGLRQDLTVSN 271
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 333 LLFVSNTSFVAGLRQDLTVSNKDYMFTLNFFSSSRTSL 220
L+F N +++GL L + + F+ +FS TSL
Sbjct: 581 LMFFKNVYWISGLLDQLEDFKRSHSFSPCYFSPHLTSL 618
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 292 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 417
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 439 SQLIKVHLDKNQQTTIEHKVDTFRLYTRS*RDA-K*PSSSPNLICKPS 579
+ L + L+++QQ + ++D+F + ++ R+ + SS+PN+ K S
Sbjct: 95 NSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESSSNPNISRKQS 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,867
Number of Sequences: 5004
Number of extensions: 46426
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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