Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30159
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 87 1e-17
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 85 3e-17
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 85 3e-17
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 84 6e-17
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 84 6e-17
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.1
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.1
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.5
At1g69060.1 68414.m07902 expressed protein 28 5.8
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 86.6 bits (205), Expect = 1e-17
Identities = 43/88 (48%), Positives = 62/88 (70%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ K V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 504
R +LDGS+++KV LD ++ E+K++T
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYKLET 169
Score = 80.2 bits (189), Expect = 1e-15
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 184
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 185 MPKLKAFQKIQIRLVRELEKKFSVNM*SLLETVRSCLSPATK 310
KAF+KI RLVRELEKKFS + T R + P K
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFS-GKDVIFVTTRRIMRPPKK 107
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 513 VYKKLTGREVTFEFP 557
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/89 (48%), Positives = 63/89 (70%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ K V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 507
R +LDG++++KV LD ++ E+KV+ F
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 184
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 185 MPKLKAFQKIQIRLVRELEKKFSVNM*SLLETVRSCLSP 301
KA++KI +RLVRELEKKFS L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 510 SVYKKLTGREVTFEFP 557
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/89 (48%), Positives = 63/89 (70%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ K V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 507
R +LDG++++KV LD ++ E+KV+ F
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
Score = 75.4 bits (177), Expect = 3e-14
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 2/99 (2%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 184
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 185 MPKLKAFQKIQIRLVRELEKKFSVNM*SLLETVRSCLSP 301
KA++KI +RLVRELEKKFS L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.9 bits (69), Expect = 0.36
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +3
Query: 510 SVYKKLTGREVTFEFP 557
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 84.2 bits (199), Expect = 6e-17
Identities = 42/83 (50%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 184
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 185 MPKLKAFQKIQIRLVRELEKKFS 253
KAF+KI +RLVRELEKKFS
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFS 89
Score = 83.8 bits (198), Expect = 8e-17
Identities = 41/88 (46%), Positives = 62/88 (70%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ K V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 504
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 513 VYKKLTGREVTFEFP 557
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 84.2 bits (199), Expect = 6e-17
Identities = 42/83 (50%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 184
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 185 MPKLKAFQKIQIRLVRELEKKFS 253
KAF+KI +RLVRELEKKFS
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFS 89
Score = 83.8 bits (198), Expect = 8e-17
Identities = 41/88 (46%), Positives = 62/88 (70%)
Frame = +1
Query: 241 KEVQCKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 420
K+ K V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 421 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 504
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 513 VYKKLTGREVTFEFP 557
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 324 QTKEATLKDIDLCVRCYPRGLG 389
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 324 QTKEATLKDIDLCVRCYPRGLG 389
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 443 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 342
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/74 (28%), Positives = 43/74 (58%)
Frame = +2
Query: 101 KAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSVNM*SLLET 280
+++ R+L I +A E + K+ + + +++ QK ++ VRE +KK NM ++ E
Sbjct: 485 ESRQRQLQI-QADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQKKDEENM-NMKEK 542
Query: 281 VRSCLSPATKLVLL 322
VR+ ++ + KL+ L
Sbjct: 543 VRAEITKSLKLLEL 556
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,245
Number of Sequences: 28952
Number of extensions: 248192
Number of successful extensions: 677
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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