Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30158
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    28   6.8  
08_02_1074 + 24135988-24137454                                         28   9.0  
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    28   9.0  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 630 KGQNDSTNKAWSIKALACTVGSMCVGASVDLASSDF 523
           K Q+ S  ++   KA  C++ S+CVG  V   S+ F
Sbjct: 410 KKQDTSVEESKRRKAAVCSISSVCVGVVVLTTSASF 445


>08_02_1074 + 24135988-24137454
          Length = 488

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 310 ADTGVASVTFSASGFTFLSQS*YLLQKL 227
           AD GV  VTFSASG  +L+ S  L ++L
Sbjct: 157 ADLGVPHVTFSASGAHYLAVSHSLWRRL 184


>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 100 IALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 207
           I LP E+  A LG  V   HD P APG   +    V
Sbjct: 5   IILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,000
Number of Sequences: 37544
Number of extensions: 286796
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)