BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30158 (745 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value M35093-1|AAB59612.1| 307|Homo sapiens tumor mucin antigen protein. 33 0.82 X52229-1|CAA36478.1| 515|Homo sapiens precursor polypeptide (AA... 33 1.1 X52228-1|CAA36477.1| 347|Homo sapiens precursor polypeptide (AA... 33 1.1 M61170-1|AAB53150.1| 475|Homo sapiens polymorphic epithelial mu... 33 1.1 M32739-1|AAA35806.1| 147|Homo sapiens protein ( Human episialin... 33 1.1 M32738-1|AAA35804.1| 156|Homo sapiens protein ( Human episialin... 33 1.1 M31823-1|AAA35757.1| 169|Homo sapiens protein ( Human breast ca... 33 1.1 J05582-1|AAA60019.1| 1255|Homo sapiens mucin protein. 33 1.1 J05581-1|AAA59876.1| 475|Homo sapiens polymorphic epithelial mu... 33 1.1 AL713999-10|CAI95078.1| 475|Homo sapiens mucin 1, cell surface ... 33 1.1 Y18563-1|CAB96131.1| 629|Homo sapiens Nuraminidase protein. 31 4.4 >M35093-1|AAB59612.1| 307|Homo sapiens tumor mucin antigen protein. Length = 307 Score = 33.5 bits (73), Expect = 0.82 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P Q TSA +T+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAQGVTSAPETR 145 >X52229-1|CAA36478.1| 515|Homo sapiens precursor polypeptide (AA -21 to 494) protein. Length = 515 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >X52228-1|CAA36477.1| 347|Homo sapiens precursor polypeptide (AA -21 to 326) protein. Length = 347 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >M61170-1|AAB53150.1| 475|Homo sapiens polymorphic epithelial mucin protein. Length = 475 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >M32739-1|AAA35806.1| 147|Homo sapiens protein ( Human episialin variant B mRNA, 5' end. ). Length = 147 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >M32738-1|AAA35804.1| 156|Homo sapiens protein ( Human episialin variant A mRNA, 5' end. ). Length = 156 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 117 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 154 >M31823-1|AAA35757.1| 169|Homo sapiens protein ( Human breast carcinoma-associated antigen DF3 mRNA, 5' end. ). Length = 169 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 117 LGSTTPPAHDVTSAPDNKPAPGSTA--PQAHGVTSAPDTR 154 >J05582-1|AAA60019.1| 1255|Homo sapiens mucin protein. Length = 1255 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >J05581-1|AAA59876.1| 475|Homo sapiens polymorphic epithelial mucin protein. Length = 475 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >AL713999-10|CAI95078.1| 475|Homo sapiens mucin 1, cell surface associated protein. Length = 475 Score = 33.1 bits (72), Expect = 1.1 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 133 LGTTVPVPHDIPQAP-GKPEENATAVQPTKQNTTSAVDTK 249 LG+T P HD+ AP KP +TA P TSA DT+ Sbjct: 108 LGSTTPPAHDVTSAPDNKPAPGSTA--PPAHGVTSAPDTR 145 >Y18563-1|CAB96131.1| 629|Homo sapiens Nuraminidase protein. Length = 629 Score = 31.1 bits (67), Expect = 4.4 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +1 Query: 55 MKILAFVCL-LKFAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTK-QNT 228 +++L C L +C++LP+ +GA G P D+P P E A++ PT+ + Sbjct: 137 LRVLRLSCFSLSILLCLSLPSLGAGASSGLRRMRPADLPPRP-MEESPASSSAPTETEEP 195 Query: 229 TSAVDTKTEI 258 S+ + E+ Sbjct: 196 GSSAEVMEEV 205 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 93,676,320 Number of Sequences: 237096 Number of extensions: 1729788 Number of successful extensions: 4211 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3960 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4211 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8903143626 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -