Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30158
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m...    28   8.0  
AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk (m...    28   8.0  

>Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical
           protein C14A4.6 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 597 SIKALACTVGSMCVGASVDLASSDFGVVASLFWLQLTSLFHFF 469
           SI A+ C V SM +  S +  + DFG +    +  + +L H F
Sbjct: 85  SILAIICYVISMAISISSEEVTDDFGFLVVAIFCFIIALIHVF 127


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 424 LNQLKLYQNT-RQKLLKKVKQARQLKPKKRCDHSEI 528
           L QLK Y    +Q L KKV+Q   ++P+K  D  +I
Sbjct: 72  LKQLKFYLRACQQALYKKVRQVLIIQPEKFLDQQKI 107


>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform a
           protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 609 WWNHSDPWSLGYRIHGIQILQEPH*KKLPYTINF-ISNK 722
           W   SD WS G  +  +   +EP+   +P TI F I+NK
Sbjct: 373 WSEASDVWSYGVVLWELLTREEPYQGHIPATIAFQIANK 411


>AF039047-14|AAM15589.1|  978|Caenorhabditis elegans Human mlk
           (mixed lineage kinase)homolog protein 1, isoform b
           protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 609 WWNHSDPWSLGYRIHGIQILQEPH*KKLPYTINF-ISNK 722
           W   SD WS G  +  +   +EP+   +P TI F I+NK
Sbjct: 373 WSEASDVWSYGVVLWELLTREEPYQGHIPATIAFQIANK 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,690
Number of Sequences: 27780
Number of extensions: 265131
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)