Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30157
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BWA5 Cluster: Chromosome undetermined scaffold_131, w...    34   3.8  
UniRef50_A7BCR6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  
UniRef50_Q7Z4V0 Cluster: Zinc finger protein 438; n=23; Theria|R...    33   8.8  

>UniRef50_A0BWA5 Cluster: Chromosome undetermined scaffold_131,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_131,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 703

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = +2

Query: 149 FASLLFSCVVSVMFSICIGEYCRQQRATVLDVSYTANSVKESCR-----CLKLRSLGQLC 313
           FA    SC+ S   + C G  C Q R        T N++  SC      C    S  Q  
Sbjct: 233 FAGACVSCLTSGYCATCQGSNCTQCRTGYFPTKDTTNTIILSCNACPTGCTSCTSSTQCT 292

Query: 314 DIHSSHFKCL-SLARPRCRCKSARLRL 391
           D  +S++K   +L  P  +C S   +L
Sbjct: 293 DCVTSYYKYTDNLCYPLNKCASINTQL 319


>UniRef50_A7BCR6 Cluster: Putative uncharacterized protein; n=1;
           Actinomyces odontolyticus ATCC 17982|Rep: Putative
           uncharacterized protein - Actinomyces odontolyticus ATCC
           17982
          Length = 595

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 27  LRLRWARRCFTSHF*G*GGHDGALLPVYFLSSMVRCGFGRILRP 158
           L L   R  FTS   G GG  G   P  F+ +M    FG ++ P
Sbjct: 318 LALMLGRAVFTSFTIGMGGSGGVFAPTLFIGAMAGAAFGDVISP 361


>UniRef50_Q7Z4V0 Cluster: Zinc finger protein 438; n=23; Theria|Rep:
           Zinc finger protein 438 - Homo sapiens (Human)
          Length = 828

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 369 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 256
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,495,974
Number of Sequences: 1657284
Number of extensions: 14267954
Number of successful extensions: 35575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35512
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)