Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30157
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      30   1.5  
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_14604| Best HMM Match : PT (HMM E-Value=5.1)                        29   4.7  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   6.2  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   8.3  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    28   8.3  

>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = +2

Query: 83  ARRCFTSRLFFEQYG*MRIRPDFASLLFSCVVSVMFSICIGEYCRQQRATVLDVSYTANS 262
           +RRC   R+F       R+  D   ++FSC   V   + +   C   RA   DV    N+
Sbjct: 196 SRRCVPHRVFISLCSPSRVHVDVFPIVFSC-RCVPHRVLM-SMCSPTRA---DVDVLPNT 250

Query: 263 VKESCRCLKLRSLGQLC 313
              SCRC+  R L  +C
Sbjct: 251 C--SCRCVPHRVLMSMC 265


>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2306

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 152 QNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPQPQKW 21
           Q  AE  S     KI  +  T  PT+  + G+K    PP+ +KW
Sbjct: 789 QREAEDLSARCT-KIQNRDRTQTPTTHVQQGTKTAKMPPRIEKW 831


>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 188 TLPTQHS*TVGTQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPQPQKWEVKH 9
           TL T+   +  + NP + A+     K  G  +T + T+ +  G +A +   +PQ WE K 
Sbjct: 270 TLGTKPKPSGPSHNPRDQATTLGTNKNPGDQATTLETNKNP-GDQATTLGTKPQPWEKKK 328

Query: 8   R 6
           R
Sbjct: 329 R 329



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 187 HYRHNTAKQ*GRKIRPNPHLTIL-LKK*TGSKAPSCPPQPQKWEVKHRRAHLNLKN 23
           H   + A   G    P    T L   K  G +A +   +PQ WE K R  +L L+N
Sbjct: 282 HNPRDQATTLGTNKNPGDQATTLETNKNPGDQATTLGTKPQPWEKKKRITYLGLEN 337


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +3

Query: 90   GALLPVYFLSSMVRCGFGRILRPYCLAVLC 179
            GAL P Y LSS VR   GR +R +CL   C
Sbjct: 2411 GALDPKYVLSSRVRT--GRSIRGFCLPPHC 2438


>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 290 LRSLGQLCDIHSSHFKCLSLARPRCRCK 373
           + S G+L   H+S  + L   RPRCRC+
Sbjct: 342 ISSTGRLYCPHTSRAEVLCRRRPRCRCR 369


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 SCRCLKLRSLGQLCDIHSSHFKCLSLARPRCRCKS 376
           SCRC+  R L  +C   S+H     +A   CRC S
Sbjct: 275 SCRCVSHRVLMSMCSPLSAHVDVFPIA-CSCRCVS 308


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +2

Query: 197 CIGEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQLCDIHSSHFKCLSLARPRCRC 370
           C+ +       + L V      +  SCRC+  R L  +C +  +H     +A   CRC
Sbjct: 50  CVSDRVLMPMCSPLCVHVDVFPIACSCRCVSHRGLMSMCFLSRAHVDVFLIA-CSCRC 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,733,623
Number of Sequences: 59808
Number of extensions: 480338
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)