Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30157
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.4  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   5.5  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
 Frame = +2

Query: 203  GEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQL--CDIHSSHFKCLSLARPRCRCKS 376
            G  C Q + T  D+ Y       SC C    ++  L  CD+ +    C   A  R RC  
Sbjct: 732  GRICDQCKPTFWDLQYHHEDGCRSCDCNVNGTISGLNTCDLKTGQCMCKKNADGR-RCDQ 790

Query: 377  ARLRL**GF*ILESFRALRSGCIFFCYVTEGDLVDASSDVAGRDCFC 517
                   GF  L S+  +  GC   C+   G  + A  D+    C C
Sbjct: 791  CA----DGFYRLNSYNQM--GC-ESCHCDIGGALRAECDITSGQCKC 830


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
 Frame = +2

Query: 203  GEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQL--CDIHSSHFKCLSLARPRCRCKS 376
            G  C Q + T  D+ Y       SC C    ++  L  CD+ +    C   A  R RC  
Sbjct: 732  GRICDQCKPTFWDLQYHHEDGCRSCDCNVNGTISGLNTCDLKTGQCMCKKNADGR-RCDQ 790

Query: 377  ARLRL**GF*ILESFRALRSGCIFFCYVTEGDLVDASSDVAGRDCFC 517
                   GF  L S+  +  GC   C+   G  + A  D+    C C
Sbjct: 791  CA----DGFYRLNSYNQM--GC-ESCHCDIGGALRAECDITSGQCKC 830


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
 Frame = +2

Query: 203  GEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQL--CDIHSSHFKCLSLARPRCRCKS 376
            G  C Q + T  D+ Y       SC C    ++  L  CD+ +    C   A  R RC  
Sbjct: 732  GRICDQCKPTFWDLQYHHEDGCRSCDCNVNGTISGLNTCDLKTGQCMCKKNADGR-RCDQ 790

Query: 377  ARLRL**GF*ILESFRALRSGCIFFCYVTEGDLVDASSDVAGRDCFC 517
                   GF  L S+  +  GC   C+   G  + A  D+    C C
Sbjct: 791  CA----DGFYRLNSYNQM--GC-ESCHCDIGGALRAECDITSGQCKC 830


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
 Frame = +2

Query: 203  GEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQL--CDIHSSHFKCLSLARPRCRCKS 376
            G  C Q + T  D+ Y       SC C    ++  L  CD+ +    C   A  R RC  
Sbjct: 732  GRICDQCKPTFWDLQYHHEDGCRSCDCNVNGTISGLNTCDLKTGQCMCKKNADGR-RCDQ 790

Query: 377  ARLRL**GF*ILESFRALRSGCIFFCYVTEGDLVDASSDVAGRDCFC 517
                   GF  L S+  +  GC   C+   G  + A  D+    C C
Sbjct: 791  CA----DGFYRLNSYNQM--GC-ESCHCDIGGALRAECDITSGQCKC 830


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = +2

Query: 416 SFRALRSGCIFFCYVTEGDLVDASSDVAGRDCFC-----*EMKRSRTPRRQERPCYRILA 580
           S  ++R G +  C    GD      +  GR CFC      E+  SRT       CY I +
Sbjct: 356 SSSSIRGGFVPAC-TASGDFERVQCETNGRQCFCVNTQGIEVPNSRTRDGTRPDCYSIQS 414

Query: 581 SPT 589
           S T
Sbjct: 415 SRT 417


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/49 (46%), Positives = 26/49 (53%)
 Frame = -2

Query: 176 QHS*TVGTQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPQP 30
           Q S +V TQ PA S S  TA +  G  S     S+S MGS A S  PQP
Sbjct: 714 QGSSSVTTQPPASSRS--TASQ--GSSSAQPIASSSTMGSTAGSSSPQP 758


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,941
Number of Sequences: 27780
Number of extensions: 357048
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)