Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30157
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 685 CFNKNRTHERHAQKKEAKAQRGIVFI 608
           C+N++RT ERH  +  A++   +  I
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 685 CFNKNRTHERHAQKKEAKAQRGIVFI 608
           C+N++RT ERH  +  A++   +  I
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 685 CFNKNRTHERHAQKKEAKAQRGIVFI 608
           C+N++RT ERH  +  A++   +  I
Sbjct: 329 CWNEHRTLERHNIRTVAQSDETLQMI 354


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 533 SRTPRRQERPCYRILASPTES 595
           S+TP+  + P +R L SP++S
Sbjct: 560 SKTPQPPQCPRFRKLDSPSDS 580


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 148 IRPNPHLTILLKK*TGSKAPSCPPQPQ 68
           I P+  +T   K+    ++P CPP P+
Sbjct: 191 IGPSIRITPAKKRIKLEQSPLCPPAPR 217


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 291 NLRHLHDSFTELAV*ETSKTVARCCRQYSPIQILN 187
           N  +  DS+T   + ET + +   CRQ   +++ N
Sbjct: 439 NQPYTKDSYTVAGMGETIEDLLHFCRQMYAMKVNN 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,692
Number of Sequences: 438
Number of extensions: 4113
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)