Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30157
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48890.1 68418.m06048 hypothetical protein                          31   0.96 
At2g38950.1 68415.m04786 transcription factor jumonji (jmj) fami...    31   0.96 
At5g54020.1 68418.m06719 expressed protein                             29   3.9  
At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein / c...    29   3.9  
At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase fa...    28   5.1  
At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase fa...    28   5.1  
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    28   6.8  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    28   6.8  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    28   6.8  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    27   8.9  
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At5g48890.1 68418.m06048 hypothetical protein
          Length = 173

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 197 CIGEYCRQQRATVLDVSY-TANSVKESCRCLKL 292
           C G YC QQR  +LD  Y   NS K   +CL L
Sbjct: 137 CKGGYCCQQRVDILDHHYNVVNSDKGKDQCLDL 169


>At2g38950.1 68415.m04786 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 708

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 236 LDVSYTANSVKESCRCLKLRSLGQL-CDIHSSHFKCLSLARPRCRCKSAR 382
           +D SY A + +E C CL    L  + C   ++ + CL+  R  C C   R
Sbjct: 532 MDKSYDAVNKRECCVCLGDLYLSAVNCSCSANRYSCLNHMRKLCACPCDR 581


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 200 IGEYCRQQRATVLDVSYTANSVKESCRCLKLRSLGQLC 313
           I  +C ++    LD +Y  ++V   CRC  L   G  C
Sbjct: 267 IVHFCHEEHVLRLDENYVTDNVNMRCRCCVLAIDGDPC 304


>At1g13130.1 68414.m01522 glycosyl hydrolase family 5 protein /
           cellulase family protein
          Length = 552

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +2

Query: 236 LDVSYTANSVKESCRCLKLRSLGQLCDIHSSHFKCLSLARPRCRCKSARL 385
           LDV    N V  +C+CL   S  + C+  S  FK +   RP    KS+RL
Sbjct: 501 LDVDTANNVVANACKCL---SKDKSCEPMSQWFKIIKATRP---LKSSRL 544


>At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 366

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 426 ALKLSKI*NPYYRRKRALLHLQRGR 352
           A ++S++  PY RR RA+ HL++GR
Sbjct: 195 AFRMSEVAEPYIRR-RAIRHLEKGR 218


>At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 339

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 426 ALKLSKI*NPYYRRKRALLHLQRGR 352
           A ++S++  PY RR RA+ HL++GR
Sbjct: 195 AFRMSEVAEPYIRR-RAIRHLEKGR 218


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 692 PNMFQQEPNTRTPRTKKRGKGAARDRFYSFSAGSRSEMPGFGN 564
           P + ++  +  T R  +RG+    DRF     G   EM  FG+
Sbjct: 117 PEVVRRNVDRDTSRGPRRGREGQSDRFGGAKRGKEGEMDRFGS 159


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 333  K*EEWISHNCPKLRNLRHLHDSFTELAV*ETSKTVARCCRQYSPIQILNITDTTQLNSRD 154
            K E+ I ++  K  N +   +   ELA    SK   + C+ +S    L+    +++NS  
Sbjct: 807  KEEKIIQYSRKKKLNPKPSAEQVQELATLAKSKDFDKTCKNFSSRSHLDSAIRSEMNSEI 866

Query: 153  AKSGRI 136
              SGR+
Sbjct: 867  GDSGRV 872


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 106 TGSKAPSCPPQPQKWEVKHRRAHL 35
           TGS +PS PP  QK +V HRR +L
Sbjct: 512 TGSFSPSSPPHYQK-DVLHRRQNL 534


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 202 DTDTEHYRHNTAKQ*GRKIRPNPHLTILLKK*TGSKA-PSCPPQPQKWEVKHRR 44
           D+    Y     ++ G K++  P L++  +  +   A  SC P+PQ+    HRR
Sbjct: 204 DSPRFSYDERETRKTGAKLKETPRLSLDSRSNSFRSARSSCSPEPQELVTGHRR 257


>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 243

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 575 LASPTESQR*NYKNDPSLRLCLFFLCVAFVCSVL 676
           +A P +SQR   +     R+ +FFLC   +C +L
Sbjct: 209 IAQPYQSQRMMQREKSLNRVSIFFLCCIILCLLL 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,450,226
Number of Sequences: 28952
Number of extensions: 319003
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)